Conservation of cofitness between GFF6333 and GFF7323 in Variovorax sp. SCN45

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF6333 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) 1.0 GFF7323 Transcriptional response regulatory protein GlrR 0.71 1
Variovorax sp. OAS795 0.88 ABID97_RS04550 1,4-alpha-glucan branching protein GlgB 0.97 ABID97_RS06460 sigma 54-interacting transcriptional regulator low > 91
Pectobacterium carotovorum WPP14 0.63 HER17_RS01485 1,4-alpha-glucan branching enzyme 0.55 HER17_RS05925 two-component system response regulator GlrR low > 75
Serratia liquefaciens MT49 0.62 IAI46_23940 1,4-alpha-glucan branching protein GlgB 0.55 IAI46_19460 two-component system response regulator GlrR low > 86
Klebsiella michiganensis M5al 0.62 BWI76_RS26215 glycogen-branching enzyme 0.56 BWI76_RS21250 two-component system response regulator GlrR low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF575 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) 0.57 GFF2455 Putative sensory histidine kinase YfhA 0.86 3
Escherichia coli Nissle 1917 0.62 ECOLIN_RS19640 1,4-alpha-glucan branching enzyme 0.54 ECOLIN_RS14455 two-component system response regulator GlrR low > 55
Escherichia coli ECRC62 0.62 BNILDI_02840 glgB 1,4-alpha-glucan branching enzyme 0.54 BNILDI_11970 qseF two-component system response regulator QseF/GlrR low > 75
Enterobacter sp. TBS_079 0.62 MPMX20_04314 1,4-alpha-glucan branching enzyme GlgB 0.55 MPMX20_03423 Transcriptional regulatory protein QseF low > 85
Escherichia coli ECOR38 0.62 HEPCGN_15700 glgB 1,4-alpha-glucan branching enzyme 0.54 HEPCGN_20640 qseF two-component system response regulator QseF/GlrR low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_00269 1,4-alpha-glucan branching enzyme GlgB 0.54 OHPLBJKB_01153 Transcriptional regulatory protein GlrR low > 73
Escherichia coli BL21 0.62 ECD_03284 1,4-alpha-glucan branching enzyme 0.54 ECD_02446 response regulator regulating glmY sRNA in two-component system with sensor protein GlrK low > 61
Escherichia coli BW25113 0.62 b3432 glgB glycogen branching enzyme (NCBI) 0.54 b2554 yfhA predicted DNA-binding response regulator in two-component system (NCBI) low > 76
Escherichia coli ECRC102 0.62 NIAGMN_14655 glgB 1,4-alpha-glucan branching enzyme 0.54 NIAGMN_19265 qseF two-component system response regulator QseF/GlrR
Escherichia coli ECRC99 0.62 KEDOAH_11255 glgB 1,4-alpha-glucan branching enzyme 0.54 KEDOAH_06725 qseF two-component system response regulator QseF/GlrR
Escherichia coli ECRC101 0.62 MCAODC_07415 glgB 1,4-alpha-glucan branching enzyme 0.54 MCAODC_12025 qseF two-component system response regulator QseF/GlrR low > 87
Escherichia coli ECRC100 0.62 OKFHMN_16885 glgB 1,4-alpha-glucan branching enzyme 0.54 OKFHMN_21495 qseF two-component system response regulator QseF/GlrR low > 80
Escherichia coli ECOR27 0.62 NOLOHH_08675 glgB 1,4-alpha-glucan branching enzyme 0.54 NOLOHH_13170 qseF two-component system response regulator QseF/GlrR low > 75
Escherichia fergusonii Becca 0.62 EFB2_00387 1,4-alpha-glucan branching enzyme GlgB 0.54 EFB2_01342 Transcriptional regulatory protein QseF low > 86
Escherichia coli ECRC98 0.62 JDDGAC_20515 glgB 1,4-alpha-glucan branching enzyme 0.54 JDDGAC_25160 qseF two-component system response regulator QseF/GlrR low > 86
Dickeya dianthicola 67-19 0.61 HGI48_RS19855 1,4-alpha-glucan branching protein GlgB 0.55 HGI48_RS15735 two-component system response regulator GlrR low > 71
Enterobacter asburiae PDN3 0.61 EX28DRAFT_4115 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase 0.55 EX28DRAFT_0096 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains low > 76
Dickeya dianthicola ME23 0.61 DZA65_RS20930 1,4-alpha-glucan branching protein GlgB 0.55 DZA65_RS16815 two-component system response regulator GlrR low > 75
Rahnella sp. WP5 0.61 EX31_RS05025 1,4-alpha-glucan branching enzyme 0.55 EX31_RS20615 two-component system response regulator GlrR low > 89
Pantoea sp. MT58 0.61 IAI47_01680 1,4-alpha-glucan branching enzyme 0.56 IAI47_04945 two-component system response regulator GlrR low > 76
Dickeya dadantii 3937 0.60 DDA3937_RS19745 1,4-alpha-glucan branching protein GlgB 0.55 DDA3937_RS15640 two-component system response regulator GlrR low > 74
Pseudomonas simiae WCS417 0.54 PS417_12805 glycogen branching protein 0.37 PS417_05525 Fis family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25-INTG 0.54 PFLU_RS13485 1,4-alpha-glucan branching protein GlgB 0.37 PFLU_RS05610 sigma-54-dependent Fis family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.54 PFLU_RS13485 1,4-alpha-glucan branching protein GlgB 0.37 PFLU_RS05610 sigma-54-dependent Fis family transcriptional regulator low > 109
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_22945 glycogen branching protein 0.37 AO353_16225 Fis family transcriptional regulator low > 101
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS11650 glycogen branching protein 0.67 HSERO_RS23710 response regulator GlrR low > 78
Shewanella loihica PV-4 0.49 Shew_1168 glycogen branching enzyme (RefSeq) 0.33 Shew_2341 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.44 MIT1002_02399 1,4-alpha-glucan branching enzyme GlgB 0.53 MIT1002_01326 Quorum-sensing regulator protein F
Desulfovibrio vulgaris Miyazaki F 0.43 DvMF_0840 glycogen branching enzyme (RefSeq) 0.36 DvMF_2095 two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) low > 51

Not shown: 35 genomes with orthologs for GFF6333 only; 14 genomes with orthologs for GFF7323 only