| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF2850 | | Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) | 1.0 | GFF2280 | | Copper-sensing two-component system response regulator CpxR | 0.70 | 4 |
| Escherichia coli ECRC102 | 0.82 | NIAGMN_01620 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.92 | NIAGMN_11600 | cpxR | envelope stress response regulator transcription factor CpxR | — | — |
| Escherichia coli ECRC98 | 0.82 | JDDGAC_01015 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.92 | JDDGAC_17470 | cpxR | envelope stress response regulator transcription factor CpxR | low | > 86 |
| Escherichia coli ECRC99 | 0.82 | KEDOAH_01665 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.92 | KEDOAH_14310 | cpxR | envelope stress response regulator transcription factor CpxR | — | — |
| Escherichia coli ECRC100 | 0.82 | OKFHMN_26440 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.92 | OKFHMN_13845 | cpxR | envelope stress response regulator transcription factor CpxR | — | — |
| Escherichia coli ECOR27 | 0.82 | NOLOHH_16950 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.92 | NOLOHH_05980 | cpxR | envelope stress response regulator transcription factor CpxR | — | — |
| Escherichia coli BL21 | 0.82 | ECD_01806 | | 16S rRNA m(5)C1407 methyltransferase, SAM-dependent | 0.92 | ECD_03798 | | response regulator in two-component regulatory system with CpxA | — | — |
| Escherichia coli ECRC62 | 0.82 | BNILDI_15745 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.92 | BNILDI_05545 | cpxR | envelope stress response regulator transcription factor CpxR | low | > 75 |
| Escherichia coli BW25113 | 0.82 | b1835 | yebU | putative nucleolar proteins (VIMSS) | 0.92 | b3912 | cpxR | DNA-binding response regulator in two-component regulatory system with CpxA (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.82 | HEPCGN_04840 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.92 | HEPCGN_12490 | cpxR | envelope stress response regulator transcription factor CpxR | low | > 87 |
| Escherichia coli Nissle 1917 | 0.81 | ECOLIN_RS10215 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.92 | ECOLIN_RS22540 | | envelope stress response regulator transcription factor CpxR | — | — |
| Escherichia coli ECRC101 | 0.81 | MCAODC_18965 | rsmF | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.92 | MCAODC_04345 | cpxR | envelope stress response regulator transcription factor CpxR | low | > 87 |
| Escherichia fergusonii Becca | 0.81 | EFB2_02166 | | Ribosomal RNA small subunit methyltransferase F | 0.92 | EFB2_04705 | | Transcriptional regulatory protein CpxR | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.81 | OHPLBJKB_01896 | | Ribosomal RNA small subunit methyltransferase F | 0.92 | OHPLBJKB_04138 | | Transcriptional regulatory protein CpxR | low | > 73 |
| Enterobacter asburiae PDN3 | 0.75 | EX28DRAFT_0721 | | NOL1/NOP2/sun family putative RNA methylase | 0.92 | EX28DRAFT_4387 | | Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain | low | > 76 |
| Enterobacter sp. TBS_079 | 0.73 | MPMX20_02742 | | Ribosomal RNA small subunit methyltransferase F | 0.92 | MPMX20_04556 | | Transcriptional regulatory protein CpxR | low | > 85 |
| Klebsiella michiganensis M5al | 0.70 | BWI76_RS18000 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.91 | BWI76_RS00720 | | DNA-binding response regulator | low | > 92 |
| Pantoea sp. MT58 | 0.65 | IAI47_08680 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.91 | IAI47_00760 | | envelope stress response regulator transcription factor CpxR | 0.72 | 39 |
| Serratia liquefaciens MT49 | 0.64 | IAI46_10775 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.86 | IAI46_24660 | | envelope stress response regulator transcription factor CpxR | low | > 86 |
| Rahnella sp. WP5 | 0.62 | EX31_RS24855 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.91 | EX31_RS14320 | | envelope stress response regulator transcription factor CpxR | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.61 | HER17_RS11715 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.90 | HER17_RS00665 | | envelope stress response regulator transcription factor CpxR | low | > 75 |
| Dickeya dadantii 3937 | 0.61 | DDA3937_RS11990 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.84 | DDA3937_RS00780 | | envelope stress response regulator transcription factor CpxR | — | — |
| Dickeya dianthicola ME23 | 0.60 | DZA65_RS12530 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.83 | DZA65_RS21610 | | envelope stress response regulator transcription factor CpxR | 0.43 | 33 |
| Dickeya dianthicola 67-19 | 0.60 | HGI48_RS12080 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.83 | HGI48_RS20595 | | envelope stress response regulator transcription factor CpxR | low | > 71 |
| Vibrio cholerae E7946 ATCC 55056 | 0.53 | CSW01_07545 | | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | 0.58 | CSW01_13590 | | DNA-binding response regulator | low | > 62 |
| Shewanella oneidensis MR-1 | 0.47 | SO2609 | | NOL1/NOP2/sun family protein (NCBI ptt file) | 0.51 | SO4477 | cpxR | transcriptional regulatory protein CpxR (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_1770 | yebU | rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) | 0.51 | Shewana3_0253 | | two component transcriptional regulator (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.46 | Shew_1583 | yebU | rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) | 0.56 | Shew_3570 | | two component transcriptional regulator (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.44 | Sama_2039 | yebU | rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) | 0.52 | Sama_3432 | | response regulator receiver protein (RefSeq) | low | > 62 |
| Kangiella aquimarina DSM 16071 | 0.40 | B158DRAFT_0839 | | NOL1/NOP2/sun family putative RNA methylase | 0.48 | B158DRAFT_0066 | | two component transcriptional regulator, winged helix family | low | > 40 |