Conservation of cofitness between GFF2454 and GFF2133 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2454 Nitrogen regulatory protein P-II 1.0 GFF2133 RNase E specificity factor CsrD 0.91 9
Escherichia coli ECRC98 1.00 JDDGAC_25165 glnB nitrogen regulatory protein P-II 0.86 JDDGAC_21345 csrD RNase E specificity factor CsrD low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS14450 nitrogen regulatory protein P-II 0.86 ECOLIN_RS18635 RNase E specificity factor CsrD — —
Escherichia fergusonii Becca 1.00 EFB2_01343 Nitrogen regulatory protein P-II 1 0.86 EFB2_00579 RNase E specificity factor CsrD low > 86
Escherichia coli ECOR27 1.00 NOLOHH_13175 glnB nitrogen regulatory protein P-II 0.86 NOLOHH_09505 csrD RNase E specificity factor CsrD low > 75
Escherichia coli BL21 1.00 ECD_02445 regulatory protein P-II for glutamine synthetase 0.86 ECD_03111 targeting factor for csrBC sRNA degradation low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01154 Nitrogen regulatory protein P-II 1 0.86 OHPLBJKB_00453 RNase E specificity factor CsrD low > 73
Escherichia coli ECRC99 1.00 KEDOAH_06720 glnB nitrogen regulatory protein P-II 0.86 KEDOAH_10430 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC100 1.00 OKFHMN_21500 glnB nitrogen regulatory protein P-II 0.86 OKFHMN_17720 csrD RNase E specificity factor CsrD low > 80
Escherichia coli ECRC62 1.00 BNILDI_11975 glnB nitrogen regulatory protein P-II 0.86 BNILDI_02015 csrD RNase E specificity factor CsrD low > 75
Escherichia coli ECOR38 1.00 HEPCGN_20645 glnB nitrogen regulatory protein P-II 0.86 HEPCGN_16585 csrD RNase E specificity factor CsrD low > 87
Escherichia coli BW25113 1.00 b2553 glnB regulatory protein P-II for glutamine synthetase (NCBI) 0.86 b3252 yhdA conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECRC101 1.00 MCAODC_12030 glnB nitrogen regulatory protein P-II 0.86 MCAODC_08240 csrD RNase E specificity factor CsrD low > 87
Escherichia coli ECRC102 1.00 NIAGMN_19270 glnB nitrogen regulatory protein P-II 0.86 NIAGMN_15480 csrD RNase E specificity factor CsrD — —
Enterobacter asburiae PDN3 0.99 EX28DRAFT_0097 nitrogen regulatory protein P-II family 0.80 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain low > 76
Enterobacter sp. TBS_079 0.99 MPMX20_03422 Nitrogen regulatory protein P-II 0.80 MPMX20_04158 RNase E specificity factor CsrD low > 85
Klebsiella michiganensis M5al 0.99 BWI76_RS21245 nitrogen regulatory protein P-II 0.78 BWI76_RS25505 RNase E specificity factor CsrD low > 92
Dickeya dadantii 3937 0.97 DDA3937_RS15635 nitrogen regulatory protein P-II 0.51 DDA3937_RS01425 RNase E specificity factor CsrD low > 74
Erwinia tracheiphila SCR3 0.96 LU632_RS17925 glnB nitrogen regulatory protein P-II 0.51 LU632_RS21455 csrD RNase E specificity factor CsrD 0.57 12
Dickeya dianthicola ME23 0.96 DZA65_RS16810 nitrogen regulatory protein P-II 0.51 DZA65_RS01405 RNase E specificity factor CsrD low > 75
Dickeya dianthicola 67-19 0.96 HGI48_RS15730 nitrogen regulatory protein P-II 0.51 HGI48_RS01345 RNase E specificity factor CsrD 0.82 4
Pectobacterium carotovorum WPP14 0.95 HER17_RS05930 nitrogen regulatory protein P-II 0.52 HER17_RS20175 RNase E specificity factor CsrD low > 75
Pantoea sp. MT58 0.95 IAI47_04950 nitrogen regulatory protein P-II 0.50 IAI47_02430 RNase E specificity factor CsrD low > 76
Serratia liquefaciens MT49 0.95 IAI46_19450 nitrogen regulatory protein P-II 0.56 IAI46_22725 RNase E specificity factor CsrD low > 86
Rahnella sp. WP5 0.94 EX31_RS20610 nitrogen regulatory protein P-II 0.49 EX31_RS12230 RNase E specificity factor CsrD low > 89
Vibrio cholerae E7946 ATCC 55056 0.89 CSW01_11410 nitrogen regulatory protein P-II 0.26 CSW01_02100 RNase E specificity factor CsrD low > 62
Shewanella oneidensis MR-1 0.85 SO3519 glnB-2 nitrogen regulatory protein P-II 1 (NCBI ptt file) 0.22 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.85 Shewana3_3124 nitrogen regulatory protein P-II (RefSeq) 0.20 Shewana3_3668 regulatory protein CsrD (RefSeq) low > 73
Shewanella amazonensis SB2B 0.84 Sama_0935 nitrogen regulatory protein P-II (RefSeq) 0.21 Sama_0449 regulatory protein CsrD (RefSeq) low > 62
Shewanella loihica PV-4 0.83 Shew_1110 nitrogen regulatory protein P-II (RefSeq) 0.20 Shew_0384 regulatory protein CsrD (RefSeq) low > 60

Not shown: 48 genomes with orthologs for GFF2454 only; 6 genomes with orthologs for GFF2133 only