Conservation of cofitness between GFF2850 and GFF1717 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) 1.0 GFF1717 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB 0.67 12
Escherichia coli ECRC99 0.82 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.89 KEDOAH_13360 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Escherichia coli ECRC100 0.82 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.89 OKFHMN_14790 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Escherichia coli ECRC102 0.82 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.89 NIAGMN_12545 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Escherichia coli ECRC98 0.82 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.89 JDDGAC_18410 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 86
Escherichia coli ECOR27 0.82 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.89 NOLOHH_06925 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Escherichia coli BL21 0.82 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent 0.88 ECD_03624 16S rRNA m(7)G527 methyltransferase, SAM-dependent; glucose-inhibited cell-division protein — —
Escherichia coli ECRC62 0.82 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.89 BNILDI_04600 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 75
Escherichia coli ECOR38 0.82 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.88 HEPCGN_13505 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 87
Escherichia coli BW25113 0.82 b1835 yebU putative nucleolar proteins (VIMSS) 0.88 b3740 gidB glucose-inhibited division protein B (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F 0.88 OHPLBJKB_04313 Ribosomal RNA small subunit methyltransferase G low > 73
Escherichia fergusonii Becca 0.81 EFB2_02166 Ribosomal RNA small subunit methyltransferase F 0.88 EFB2_04893 Ribosomal RNA small subunit methyltransferase G low > 86
Escherichia coli ECRC101 0.81 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.89 MCAODC_05295 rsmG 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 0.56 12
Escherichia coli Nissle 1917 0.81 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.88 ECOLIN_RS21510 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG — —
Enterobacter asburiae PDN3 0.75 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase 0.87 EX28DRAFT_4016 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 76
Enterobacter sp. TBS_079 0.73 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F 0.89 MPMX20_04627 Ribosomal RNA small subunit methyltransferase G low > 85
Klebsiella michiganensis M5al 0.70 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.81 BWI76_RS00225 16S rRNA methyltransferase G low > 92
Pantoea sp. MT58 0.65 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.78 IAI47_00295 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 76
Serratia liquefaciens MT49 0.64 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.74 IAI46_25115 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 86
Rahnella sp. WP5 0.62 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.73 EX31_RS06135 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 89
Pectobacterium carotovorum WPP14 0.61 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.75 HER17_RS21605 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 75
Dickeya dadantii 3937 0.61 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.72 DDA3937_RS21600 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 74
Dickeya dianthicola 67-19 0.60 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.71 HGI48_RS21385 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 71
Dickeya dianthicola ME23 0.60 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.71 DZA65_RS22365 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 75
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.62 CSW01_14050 ribosomal RNA small subunit methyltransferase G low > 62
Shewanella oneidensis MR-1 0.47 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) 0.61 SO4757 gidB glucose-inhibited division protein B (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.46 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.60 Shewana3_0001 gidB 16S rRNA methyltransferase GidB (RefSeq) low > 73
Shewanella loihica PV-4 0.46 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.61 Shew_3855 gidB glucose-inhibited division protein B (RefSeq) low > 60
Shewanella amazonensis SB2B 0.44 Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.59 Sama_3654 gidB 16S rRNA methyltransferase GidB (RefSeq) 0.41 36
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase 0.40 B158DRAFT_0378 16S rRNA m(7)G-527 methyltransferase (EC 2.1.1.170) low > 40
Pontibacter actiniarum KMM 6156, DSM 19842 0.17 CA264_05610 rRNA methyltransferase 0.16 CA264_00675 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.16 ABZR88_RS00225 RNA methyltransferase 0.26 ABZR88_RS13965 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG low > 71

Not shown: 5 genomes with orthologs for GFF2850 only; 47 genomes with orthologs for GFF1717 only