Conservation of cofitness between GFF1652 and GFF1634 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1652 tRNA (5-methoxyuridine) 34 synthase 1.0 GFF1634 Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) 0.41 11
Escherichia coli BL21 0.94 ECD_01842 tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent 0.95 ECD_01826 myristoyl-acyl carrier protein (ACP)-dependent acyltransferase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.94 OHPLBJKB_01857 tRNA U34 carboxymethyltransferase 0.95 OHPLBJKB_01873 Lipid A biosynthesis myristoyltransferase — —
Escherichia coli ECOR38 0.94 HEPCGN_04630 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.94 HEPCGN_04720 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase low > 87
Escherichia coli ECRC62 0.94 BNILDI_15455 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.94 BNILDI_15545 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase — —
Escherichia coli ECRC99 0.94 KEDOAH_01885 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.94 KEDOAH_01790 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase — —
Escherichia coli ECRC98 0.94 JDDGAC_00795 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.94 JDDGAC_00890 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase low > 86
Escherichia coli ECOR27 0.94 NOLOHH_16665 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.95 NOLOHH_16755 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase — —
Escherichia coli ECRC102 0.94 NIAGMN_01840 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.94 NIAGMN_01745 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase — —
Escherichia coli ECRC101 0.94 MCAODC_19185 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.94 MCAODC_19090 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase low > 87
Escherichia coli ECRC100 0.94 OKFHMN_26220 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.94 OKFHMN_26315 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase low > 80
Escherichia coli Nissle 1917 0.94 ECOLIN_RS10700 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.94 ECOLIN_RS10335 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase — —
Escherichia fergusonii Becca 0.94 EFB2_02071 tRNA U34 carboxymethyltransferase 0.94 EFB2_02087 Lipid A biosynthesis myristoyltransferase — —
Escherichia coli BW25113 0.94 b1871 yecP predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) 0.95 b1855 lpxM lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) low > 76
Enterobacter sp. TBS_079 0.92 MPMX20_02776 tRNA U34 carboxymethyltransferase 0.88 MPMX20_02760 Lipid A biosynthesis myristoyltransferase — —
Enterobacter asburiae PDN3 0.90 EX28DRAFT_0686 tRNA (mo5U34)-methyltransferase 0.88 EX28DRAFT_0701 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase — —
Klebsiella michiganensis M5al 0.88 BWI76_RS18195 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.85 BWI76_RS18120 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase — —
Serratia liquefaciens MT49 0.82 IAI46_14675 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.73 IAI46_14595 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase — —
Dickeya dianthicola ME23 0.81 DZA65_RS10475 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.70 DZA65_RS10555 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS10065 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.70 HGI48_RS10140 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase low > 71
Dickeya dadantii 3937 0.80 DDA3937_RS10035 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.71 DDA3937_RS10110 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase — —
Erwinia tracheiphila SCR3 0.80 LU632_RS13460 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.73 LU632_RS13385 lpxM lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase — —
Rahnella sp. WP5 0.78 EX31_RS17290 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.76 EX31_RS10665 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase low > 89
Pectobacterium carotovorum WPP14 0.76 HER17_RS11890 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.70 HER17_RS11795 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase low > 75
Pantoea sp. MT58 0.74 IAI47_08405 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.77 IAI47_08475 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase — —
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_05895 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.37 CSW01_01125 lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase low > 62
Shewanella sp. ANA-3 0.64 Shewana3_1950 putative methyltransferase (RefSeq) 0.27 Shewana3_1866 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (RefSeq) — —
Shewanella loihica PV-4 0.64 Shew_2082 putative methyltransferase (RefSeq) 0.28 Shew_2213 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.64 SO2436 methyltransferase, putative (NCBI ptt file) 0.26 SO2088 lipid A biosynthesis acyltransferase, putative (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.62 Sama_1846 methyltransferase, putative (RefSeq) 0.29 Sama_1950 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (RefSeq) low > 62

Not shown: 17 genomes with orthologs for GFF1652 only; 1 genomes with orthologs for GFF1634 only