Conservation of cofitness between EX31_RS21480 and EX31_RS15960 in Rahnella sp. WP5

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS21480 5-formyltetrahydrofolate cyclo-ligase 1.0 EX31_RS15960 hypothetical protein 0.49 12
Pectobacterium carotovorum WPP14 0.69 HER17_RS19095 5-formyltetrahydrofolate cyclo-ligase 0.74 HER17_RS02240 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 75
Serratia liquefaciens MT49 0.65 IAI46_20895 5-formyltetrahydrofolate cyclo-ligase 0.77 IAI46_23250 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 86
Dickeya dadantii 3937 0.63 DDA3937_RS02410 5-formyltetrahydrofolate cyclo-ligase 0.73 DDA3937_RS22495 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 74
Dickeya dianthicola 67-19 0.62 HGI48_RS02370 5-formyltetrahydrofolate cyclo-ligase 0.73 HGI48_RS19200 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 71
Escherichia coli Nissle 1917 0.62 ECOLIN_RS16205 5-formyltetrahydrofolate cyclo-ligase 0.74 ECOLIN_RS18850 type I DNA topoisomerase low > 55
Escherichia coli ECOR38 0.62 HEPCGN_18775 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.74 HEPCGN_16375 yrdD Uncharacterized protein YrdD 0.74 10
Escherichia coli ECRC102 0.62 NIAGMN_17250 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.73 NIAGMN_15315 yrdD Uncharacterized protein YrdD — —
Escherichia fergusonii Becca 0.62 EFB2_00991 5-formyltetrahydrofolate cyclo-ligase 0.74 EFB2_00540 DNA topoisomerase 1 low > 86
Escherichia coli ECRC101 0.62 MCAODC_10005 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.73 MCAODC_08075 yrdD Uncharacterized protein YrdD low > 87
Escherichia coli ECRC99 0.62 KEDOAH_08655 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.73 KEDOAH_10595 yrdD Uncharacterized protein YrdD — —
Escherichia coli ECOR27 0.62 NOLOHH_11395 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.74 NOLOHH_09345 yrdD Uncharacterized protein YrdD low > 75
Escherichia coli ECRC98 0.62 JDDGAC_23125 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.73 JDDGAC_21175 yrdD Uncharacterized protein YrdD low > 86
Escherichia coli ECRC100 0.62 OKFHMN_19485 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.73 OKFHMN_17555 yrdD Uncharacterized protein YrdD low > 80
Escherichia coli ECRC62 0.62 BNILDI_09930 ygfA 5-formyltetrahydrofolate cyclo-ligase 0.74 BNILDI_02175 yrdD Uncharacterized protein YrdD low > 75
Enterobacter sp. TBS_079 0.60 MPMX20_03770 5-formyltetrahydrofolate cyclo-ligase 0.73 MPMX20_04191 DNA topoisomerase 1 low > 85
Klebsiella michiganensis M5al 0.60 BWI76_RS23915 5-formyltetrahydrofolate cyclo-ligase 0.74 BWI76_RS25655 DNA topoisomerase type IA zn finger domain-containing protein low > 92
Escherichia coli BW25113 0.60 b2912 ygfA putative ligase (VIMSS) 0.73 b3283 yrdD predicted DNA topoisomerase (NCBI) low > 76
Escherichia coli BL21 0.60 ECD_02743 5-formyltetrahydrofolate cyclo-ligase family protein 0.73 ECD_03134 ssDNA-binding protein, function unknown low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00804 5-formyltetrahydrofolate cyclo-ligase 0.73 OHPLBJKB_00420 DNA topoisomerase 1 low > 73
Dickeya dianthicola ME23 0.59 DZA65_RS02475 5-formyltetrahydrofolate cyclo-ligase 0.73 DZA65_RS20325 hypothetical protein low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF3012 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) 0.74 GFF2395 Similar to C-terminal Zn-finger domain of DNA topoisomerase I low > 78
Pantoea sp. MT58 0.56 IAI47_03730 5-formyltetrahydrofolate cyclo-ligase 0.70 IAI47_02305 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 76
Enterobacter asburiae PDN3 0.55 EX28DRAFT_2964 5,10-methenyltetrahydrofolate synthetase 0.73 EX28DRAFT_0044 Zn-finger domain associated with topoisomerase type I low > 76
Erwinia tracheiphila SCR3 0.53 LU632_RS05860 5-formyltetrahydrofolate cyclo-ligase 0.67 LU632_RS22455 topoisomerase DNA-binding C4 zinc finger domain-containing protein — —
Shewanella loihica PV-4 0.52 Shew_3069 5-formyltetrahydrofolate cyclo-ligase (RefSeq) 0.39 Shew_3731 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) low > 60
Shewanella oneidensis MR-1 0.51 SO0774 5-formyltetrahydrofolate cyclo-ligase family protein (NCBI ptt file) 0.40 SO0036 topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) low > 76
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_12545 5-formyltetrahydrofolate cyclo-ligase 0.53 CSW01_00255 DNA topoisomerase low > 62
Shewanella sp. ANA-3 0.50 Shewana3_3506 5-formyltetrahydrofolate cyclo-ligase (RefSeq) 0.41 Shewana3_0039 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.41 Sama_2726 5-formyltetrahydrofolate cyclo-ligase family protein (RefSeq) 0.40 Sama_0048 topoisomerase DNA-binding C4 zinc finger domain-containing protein (RefSeq) low > 62

Not shown: 49 genomes with orthologs for EX31_RS21480 only; 1 genomes with orthologs for EX31_RS15960 only