Conservation of cofitness between EX31_RS07960 and EX31_RS13645 in Rahnella sp. WP5

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.0 EX31_RS13645 transcriptional repressor MprA 0.68 4
Serratia liquefaciens MT49 0.72 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.88 IAI46_19990 transcriptional repressor MprA low > 86
Pectobacterium carotovorum WPP14 0.66 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 HER17_RS04470 transcriptional repressor MprA low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.70 HGI48_RS16825 transcriptional repressor MprA low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.69 DDA3937_RS16755 transcriptional repressor MprA low > 74
Dickeya dianthicola ME23 0.64 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.69 DZA65_RS17900 transcriptional repressor MprA low > 75
Enterobacter asburiae PDN3 0.61 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.78 EX28DRAFT_2767 Transcriptional regulators — —
Enterobacter sp. TBS_079 0.61 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 MPMX20_03562 Transcriptional repressor MprA low > 85
Pantoea sp. MT58 0.60 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.79 IAI47_04505 transcriptional repressor MprA low > 76
Escherichia coli ECOR38 0.60 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 HEPCGN_19985 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR low > 87
Escherichia coli Nissle 1917 0.60 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 ECOLIN_RS14960 multidrug efflux transporter EmrAB transcriptional repressor EmrR low > 55
Escherichia coli BW25113 0.60 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.78 b2684 mprA DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 OHPLBJKB_01049 Transcriptional repressor MprA low > 73
Escherichia coli ECRC99 0.60 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 KEDOAH_07350 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR — —
Escherichia coli ECRC101 0.60 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 MCAODC_11310 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR low > 87
Escherichia coli ECRC102 0.60 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 NIAGMN_18555 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR — —
Escherichia coli ECRC98 0.60 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 JDDGAC_24450 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR low > 86
Escherichia coli ECRC100 0.60 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 OKFHMN_20785 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR low > 80
Escherichia coli ECRC62 0.59 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.79 BNILDI_11185 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR low > 75
Escherichia coli ECOR27 0.59 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 NOLOHH_12625 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR low > 75
Escherichia fergusonii Becca 0.59 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.78 EFB2_01244 Transcriptional repressor MprA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.79 GFF1591 Transcription repressor of tripartite multidrug resistance system low > 78
Escherichia coli BL21 0.59 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.78 ECD_02539 transcriptional repressor of microcin B17 synthesis and multidrug efflux low > 61
Klebsiella michiganensis M5al 0.59 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.77 BWI76_RS22090 transcriptional regulator low > 92
Erwinia tracheiphila SCR3 0.55 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.79 LU632_RS16835 mprA transcriptional repressor MprA low > 74
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.30 ABZR86_RS13425 MarR family transcriptional regulator low > 74
Rhodanobacter denitrificans MT42 0.33 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 LRK55_RS15880 MarR family transcriptional regulator low > 63
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 LRK54_RS16130 MarR family transcriptional regulator low > 59
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.29 OKGIIK_13235 MarR family transcriptional regulator low > 52
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.21 Xcc-8004.3512.1 Transcription repressor of tripartite multidrug resistance system low > 74
Ralstonia solanacearum UW163 0.30 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.15 UW163_RS03455 MarR family transcriptional regulator — —
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.15 RALBFv3_RS10125 MarR family transcriptional regulator low > 76
Ralstonia solanacearum PSI07 0.30 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.15 RPSI07_RS23245 MarR family transcriptional regulator — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_0172 23S rRNA (uracil-5-)-methyltransferase RumA 0.14 Echvi_1584 Transcriptional regulators low > 79

Not shown: 63 genomes with orthologs for EX31_RS07960 only; 2 genomes with orthologs for EX31_RS13645 only