Conservation of cofitness between EX28DRAFT_2079 and EX28DRAFT_3675 in Enterobacter asburiae PDN3

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Enterobacter asburiae PDN3 1.0 EX28DRAFT_2079 type II secretion system protein D 1.0 EX28DRAFT_3675 transcriptional regulator, LacI family 0.57 14
Enterobacter sp. TBS_079 0.87 MPMX20_01515 Putative secretin GspD 1.00 MPMX20_00773 Catabolite repressor/activator low > 85
Rahnella sp. WP5 0.60 EX31_RS16165 type II secretion system secretin GspD 0.89 EX31_RS03655 catabolite repressor/activator low > 89
Escherichia coli BW25113 0.54 b3325 yheF putative general protein secretion protein (VIMSS) 0.98 b0080 fruR DNA-binding transcriptional dual regulator (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_00378 Putative type II secretion system protein D 0.98 OHPLBJKB_03579 Catabolite repressor/activator low > 73
Escherichia coli Nissle 1917 0.54 ECOLIN_RS19060 type II secretion system secretin GspD 0.98 ECOLIN_RS00430 catabolite repressor/activator low > 55
Escherichia fergusonii Becca 0.53 EFB2_00498 Putative secretin GspD 0.98 EFB2_03967 Catabolite repressor/activator low > 86
Klebsiella michiganensis M5al 0.51 BWI76_RS05090 type II secretion system protein GspD 0.97 BWI76_RS04705 DNA-binding transcriptional regulator FruR low > 92
Pectobacterium carotovorum WPP14 0.50 HER17_RS06685 type II secretion system secretin GspD 0.86 HER17_RS03105 catabolite repressor/activator low > 75
Escherichia coli ECRC98 0.49 JDDGAC_30295 etpD variant type II secretion system secretin EtpD 0.98 JDDGAC_14280 cra catabolite repressor/activator low > 86
Escherichia coli ECRC100 0.49 OKFHMN_00285 etpD variant type II secretion system secretin EtpD 0.98 OKFHMN_10685 cra catabolite repressor/activator low > 80
Escherichia coli ECRC102 0.49 NIAGMN_28605 etpD variant type II secretion system secretin EtpD 0.98 NIAGMN_08535 cra catabolite repressor/activator — —
Escherichia coli ECRC101 0.49 MCAODC_15265 etpD variant type II secretion system secretin EtpD 0.98 MCAODC_01200 cra catabolite repressor/activator low > 87
Dickeya dadantii 3937 0.49 DDA3937_RS14800 type II secretion system secretin GspD 0.90 DDA3937_RS18095 catabolite repressor/activator low > 74
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_13790 type II secretion system protein GspD 0.40 CSW01_16835 catabolite repressor/activator — —
Escherichia coli ECOR27 0.39 NOLOHH_10975 gspD general secretion pathway protein D 0.98 NOLOHH_03030 cra catabolite repressor/activator low > 75
Escherichia coli BL21 0.39 ECD_02838 putative type II secretion protein GspD 0.98 ECD_00081 transcriptional repressor-activator for carbon metabolism low > 61
Escherichia coli ECOR38 0.39 HEPCGN_18050 gspD general secretion pathway protein D 0.98 HEPCGN_08665 cra catabolite repressor/activator low > 87
Erwinia tracheiphila SCR3 0.34 LU632_RS25230 gspD type II secretion system secretin GspD 0.88 LU632_RS02900 cra catabolite repressor/activator low > 74
Dickeya dianthicola ME23 0.29 DZA65_RS16270 type II secretion system secretin GspD 0.90 DZA65_RS19175 catabolite repressor/activator low > 75
Dickeya dianthicola 67-19 0.29 HGI48_RS15450 type II secretion system secretin GspD 0.90 HGI48_RS18030 catabolite repressor/activator low > 71
Pseudomonas stutzeri RCH2 0.23 Psest_2577 general secretion pathway protein D 0.38 Psest_3356 D-fructose-responsive transcription factor low > 67
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_651 General secretion pathway protein D 0.37 Pf6N2E2_3340 Fructose repressor FruR, LacI family low > 103
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_09345 type II secretion system protein GspD 0.38 AO356_07340 transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E3 0.20 AO353_12545 type II secretion system protein GspD 0.38 AO353_05490 transcriptional regulator low > 101
Pseudomonas fluorescens SBW25 0.20 PFLU_RS11890 type II secretion system secretin GspD 0.35 PFLU_RS04005 catabolite repressor/activator low > 109
Pseudomonas fluorescens SBW25-INTG 0.20 PFLU_RS11890 type II secretion system secretin GspD 0.35 PFLU_RS04005 catabolite repressor/activator low > 109
Pseudomonas fluorescens GW456-L13 0.20 PfGW456L13_266 General secretion pathway protein D 0.37 PfGW456L13_5077 Fructose repressor FruR, LacI family low > 87
Pseudomonas simiae WCS417 0.19 PS417_11295 general secretion pathway protein GspD 0.35 PS417_03960 transcriptional regulator — —
Pseudomonas putida KT2440 0.16 PP_1046 Type II secretion pathway protein XcpQ 0.38 PP_0792 catabolite repressor-activator, DNA-binding transcriptional dual regulator low > 96
Pseudomonas sp. RS175 0.15 PFR28_01750 Secretin XcpQ 0.38 PFR28_00104 Catabolite repressor/activator low > 88

Not shown: 23 genomes with orthologs for EX28DRAFT_2079 only; 8 genomes with orthologs for EX28DRAFT_3675 only