Conservation of cofitness between ECD_03135 and ECD_03639 in Escherichia coli BL21

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03135 DUF494 family putative periplasmic protein 1.0 ECD_03639 transcriptional repressor of ribose metabolism 0.47 1
Escherichia coli BW25113 1.00 b3284 smg hypothetical protein (NCBI) 1.00 b3753 rbsR DNA-binding transcriptional repressor of ribose metabolism (NCBI) low > 76
Escherichia coli ECRC62 0.98 BNILDI_02180 smg DUF494 domain-containing protein 0.99 BNILDI_04665 rbsR ribose operon transcriptional repressor RbsR low > 75
Escherichia coli ECRC101 0.98 MCAODC_08070 smg DUF494 domain-containing protein 0.99 MCAODC_05230 rbsR ribose operon transcriptional repressor RbsR low > 87
Escherichia coli ECRC100 0.98 OKFHMN_17550 smg DUF494 domain-containing protein 0.99 OKFHMN_14725 rbsR ribose operon transcriptional repressor RbsR low > 80
Escherichia coli ECRC98 0.98 JDDGAC_21170 smg DUF494 domain-containing protein 0.99 JDDGAC_18345 rbsR ribose operon transcriptional repressor RbsR low > 86
Escherichia fergusonii Becca 0.98 EFB2_00539 Protein Smg 1.00 EFB2_04880 Ribose operon repressor low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS18855 DUF494 family protein Smg 0.96 ECOLIN_RS21575 ribose operon transcriptional repressor RbsR 0.49 26
Escherichia coli ECRC102 0.98 NIAGMN_15310 smg DUF494 domain-containing protein 0.99 NIAGMN_12480 rbsR ribose operon transcriptional repressor RbsR — —
Escherichia coli ECRC99 0.98 KEDOAH_10600 smg DUF494 domain-containing protein 0.99 KEDOAH_13425 rbsR ribose operon transcriptional repressor RbsR — —
Escherichia coli ECOR27 0.98 NOLOHH_09340 smg DUF494 domain-containing protein 0.99 NOLOHH_06860 rbsR ribose operon transcriptional repressor RbsR low > 75
Escherichia coli ECOR38 0.97 HEPCGN_16370 smg DUF494 domain-containing protein 0.99 HEPCGN_13435 rbsR ribose operon transcriptional repressor RbsR low > 87
Enterobacter asburiae PDN3 0.95 EX28DRAFT_0043 Uncharacterized protein conserved in bacteria 0.89 EX28DRAFT_4029 transcriptional regulator, LacI family low > 76
Enterobacter sp. TBS_079 0.95 MPMX20_04192 Protein Smg 0.88 MPMX20_04614 Ribose operon repressor low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF2394 Protein of unknown function Smg 0.89 GFF1704 Ribose operon repressor low > 78
Klebsiella michiganensis M5al 0.93 BWI76_RS25660 hypothetical protein 0.85 BWI76_RS00295 transcriptional regulator RbsR low > 92
Pantoea sp. MT58 0.85 IAI47_02300 DUF494 domain-containing protein 0.73 IAI47_00375 ribose operon transcriptional repressor RbsR low > 76
Serratia liquefaciens MT49 0.79 IAI46_23255 DUF494 domain-containing protein 0.72 IAI46_25050 ribose operon transcriptional repressor RbsR low > 86
Pectobacterium carotovorum WPP14 0.78 HER17_RS02235 DUF494 family protein 0.70 HER17_RS21525 ribose operon transcriptional repressor RbsR low > 75
Dickeya dianthicola ME23 0.76 DZA65_RS20330 DUF494 domain-containing protein 0.65 DZA65_RS22290 substrate-binding domain-containing protein low > 75
Dickeya dianthicola 67-19 0.76 HGI48_RS19205 DUF494 domain-containing protein 0.70 HGI48_RS21310 ribose operon transcriptional repressor RbsR 0.42 61
Rahnella sp. WP5 0.75 EX31_RS15965 DUF494 domain-containing protein 0.73 EX31_RS06195 ribose operon transcriptional repressor RbsR low > 89
Dickeya dadantii 3937 0.74 DDA3937_RS19115 DUF494 domain-containing protein 0.71 DDA3937_RS00055 ribose operon transcriptional repressor RbsR low > 74
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_00250 hypothetical protein 0.56 CSW01_14670 transcriptional repressor PurR low > 62
Shewanella oneidensis MR-1 0.59 SO0035 smg smg protein (NCBI ptt file) 0.22 SO3516 transcriptional regulator, LacI family (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.59 Shew_3733 hypothetical protein (RefSeq) 0.22 Shew_1870 LacI family transcription regulator (RefSeq) low > 60
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.4747.1 Protein of unknown function Smg 0.25 Xcc-8004.2362.1 Transcriptional regulator, LacI family low > 74
Variovorax sp. OAS795 0.26 ABID97_RS01835 DUF494 domain-containing protein 0.38 ABID97_RS24770 LacI family DNA-binding transcriptional regulator low > 91
Herbaspirillum seropedicae SmR1 0.25 HSERO_RS23395 hypothetical protein 0.38 HSERO_RS11495 LacI family transcription regulator low > 78
Variovorax sp. SCN45 0.24 GFF5488 Protein of unknown function Smg 0.37 GFF2137 Ribose operon repressor low > 127

Not shown: 9 genomes with orthologs for ECD_03135 only; 9 genomes with orthologs for ECD_03639 only