Conservation of cofitness between ECD_03733 and ECD_03489 in Escherichia coli BL21

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03733 transcription antitermination protein 1.0 ECD_03489 lipopolysaccharide core biosynthesis protein 0.93 1
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04211 Transcription antitermination protein RfaH 1.00 OHPLBJKB_00070 Lipopolysaccharide core heptosyltransferase RfaQ low > 73
Escherichia coli ECRC102 1.00 NIAGMN_12020 rfaH transcription/translation regulatory transformer protein RfaH 1.00 NIAGMN_13410 rfaQ lipopolysaccharide core heptosyltransferase RfaQ — —
Escherichia coli ECRC101 1.00 OKFHMN_14265 rfaH transcription/translation regulatory transformer protein RfaH 1.00 OKFHMN_15650 rfaQ lipopolysaccharide core heptosyltransferase RfaQ — —
Escherichia coli BW25113 1.00 b3842 rfaH transcriptional activator RfaH (NCBI) 0.71 b3632 rfaQ lipopolysaccharide core biosynthesis protein (NCBI) 0.69 7
Escherichia coli ECOR38 1.00 HEPCGN_12895 rfaH transcription/translation regulatory transformer protein RfaH 0.99 HEPCGN_14475 rfaQ lipopolysaccharide core heptosyltransferase RfaQ 0.75 16
Escherichia coli ECRC98 1.00 JDDGAC_17890 rfaH transcription/translation regulatory transformer protein RfaH 1.00 JDDGAC_19275 rfaQ lipopolysaccharide core heptosyltransferase RfaQ — —
Escherichia coli ECRC99 1.00 KEDOAH_13885 rfaH transcription/translation regulatory transformer protein RfaH 1.00 KEDOAH_12500 rfaQ lipopolysaccharide core heptosyltransferase RfaQ — —
Escherichia coli ECRC101 1.00 MCAODC_04770 rfaH transcription/translation regulatory transformer protein RfaH 1.00 MCAODC_06160 rfaQ lipopolysaccharide core heptosyltransferase RfaQ — —
Escherichia coli ECRC62 1.00 BNILDI_05135 rfaH transcription/translation regulatory transformer protein RfaH 1.00 BNILDI_03985 rfaQ lipopolysaccharide core heptosyltransferase RfaQ — —
Escherichia coli ECOR27 1.00 NOLOHH_06395 rfaH transcription/translation regulatory transformer protein RfaH 1.00 NOLOHH_07530 rfaQ lipopolysaccharide core heptosyltransferase RfaQ low > 57
Escherichia fergusonii Becca 1.00 EFB2_04775 Transcription antitermination protein RfaH 0.99 EFB2_00181 Lipopolysaccharide core heptosyltransferase RfaQ low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS22150 transcription/translation regulatory transformer protein RfaH 0.99 ECOLIN_RS20700 lipopolysaccharide core heptosyltransferase RfaQ low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF267 Transcriptional activator RfaH 0.67 GFF379 Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-) 0.71 5
Enterobacter asburiae PDN3 0.85 EX28DRAFT_4505 transcription elongation factor/antiterminator RfaH 0.40 EX28DRAFT_3878 lipopolysaccharide heptosyltransferase III, putative low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_04440 Transcription antitermination protein RfaH 0.42 MPMX20_00107 Lipopolysaccharide core heptosyltransferase RfaQ low > 85
Klebsiella michiganensis M5al 0.84 BWI76_RS01340 transcription/translation regulatory transformer protein RfaH 0.39 BWI76_RS27295 putative lipopolysaccharide heptosyltransferase III — —
Pantoea sp. MT58 0.76 IAI47_18250 transcription/translation regulatory transformer protein RfaH 0.40 IAI47_00660 putative lipopolysaccharide heptosyltransferase III low > 76
Serratia liquefaciens MT49 0.76 IAI46_01105 transcription/translation regulatory transformer protein RfaH 0.43 IAI46_24775 putative lipopolysaccharide heptosyltransferase III low > 86
Pectobacterium carotovorum WPP14 0.75 HER17_RS20570 transcription/translation regulatory transformer protein RfaH 0.31 HER17_RS20785 putative lipopolysaccharide heptosyltransferase III low > 75
Erwinia tracheiphila SCR3 0.74 LU632_RS23970 rfaH transcription/translation regulatory transformer protein RfaH 0.39 LU632_RS21950 rfaQ putative lipopolysaccharide heptosyltransferase III low > 74
Dickeya dianthicola ME23 0.73 DZA65_RS00995 transcription/translation regulatory transformer protein RfaH 0.26 DZA65_RS00810 putative lipopolysaccharide heptosyltransferase III low > 75
Dickeya dianthicola 67-19 0.73 HGI48_RS00935 transcription/translation regulatory transformer protein RfaH 0.27 HGI48_RS00755 putative lipopolysaccharide heptosyltransferase III 0.80 25
Rahnella sp. WP5 0.73 EX31_RS14590 transcription/translation regulatory transformer protein RfaH 0.42 EX31_RS14430 putative lipopolysaccharide heptosyltransferase III low > 89
Dickeya dadantii 3937 0.73 DDA3937_RS20290 transcription/translation regulatory transformer protein RfaH 0.27 DDA3937_RS20455 putative lipopolysaccharide heptosyltransferase III 0.68 19
Shewanella oneidensis MR-1 0.28 SO3194 transcriptional activator rfaH, putative (NCBI ptt file) 0.12 SO4678 heptosyl transferase, glycosyltransferase family 9 protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.28 Sama_2265 transcriptional activator rfaH, putative (RefSeq) 0.12 Sama_0102 glycosyl transferase family protein (RefSeq) — —
Shewanella sp. ANA-3 0.28 Shewana3_1374 transcription antitermination protein nusG (RefSeq) 0.13 Shewana3_4100 glycosyl transferase family protein (RefSeq) low > 73
Shewanella loihica PV-4 0.27 Shew_1398 NusG antitermination factor (RefSeq) 0.12 Shew_3702 glycosyl transferase family protein (RefSeq) low > 60
Pedobacter sp. GW460-11-11-14-LB5 0.18 CA265_RS01815 antitermination protein NusG 0.08 CA265_RS04395 heptosyltransferase low > 88

Not shown: 10 genomes with orthologs for ECD_03733 only; 18 genomes with orthologs for ECD_03489 only