Conservation of cofitness between ECD_03421 and ECD_03302 in Escherichia coli BL21

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03421 xylose divergent operon transcriptional activator 1.0 ECD_03302 sn-glycerol-3-phosphate ABC transporter periplasmic binding protein 0.42 38
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00135 Xylose operon regulatory protein 1.00 OHPLBJKB_00250 sn-glycerol-3-phosphate-binding periplasmic protein UgpB low > 73
Escherichia coli ECRC100 1.00 OKFHMN_15935 xylR DNA-binding transcriptional regulator XylR 1.00 OKFHMN_16770 ugpB sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 80
Escherichia coli ECRC62 1.00 BNILDI_03665 xylR DNA-binding transcriptional regulator XylR 1.00 BNILDI_02945 ugpB sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 75
Escherichia coli ECRC102 1.00 NIAGMN_13695 xylR DNA-binding transcriptional regulator XylR 1.00 NIAGMN_14540 ugpB sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB — —
Escherichia coli ECOR27 1.00 NOLOHH_07880 xylR DNA-binding transcriptional regulator XylR 1.00 NOLOHH_08560 ugpB sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 75
Escherichia coli ECRC98 1.00 JDDGAC_19565 xylR DNA-binding transcriptional regulator XylR 1.00 JDDGAC_20400 ugpB sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 86
Escherichia coli ECRC99 1.00 KEDOAH_12215 xylR DNA-binding transcriptional regulator XylR 1.00 KEDOAH_11370 ugpB sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS20410 D-xylose utilization transcriptional activator XylR 0.99 ECOLIN_RS19745 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 55
Escherichia coli BW25113 1.00 b3569 xylR DNA-binding transcriptional activator, xylose-binding (NCBI) 1.00 b3453 ugpB glycerol-3-phosphate transporter subunit (NCBI) low > 76
Escherichia coli ECRC101 1.00 MCAODC_06450 xylR DNA-binding transcriptional regulator XylR 1.00 MCAODC_07300 ugpB sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 87
Escherichia coli ECOR38 1.00 HEPCGN_14820 xylR DNA-binding transcriptional regulator XylR 0.99 HEPCGN_15590 ugpB sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 87
Escherichia fergusonii Becca 1.00 EFB2_00238 Xylose operon regulatory protein 0.99 EFB2_00369 sn-glycerol-3-phosphate-binding periplasmic protein UgpB low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF442 Xylose activator XylR (AraC family) 0.92 GFF555 Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3) low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_3834 Transcriptional regulators 0.91 EX28DRAFT_4285 ABC-type sugar transport system, periplasmic component low > 76
Enterobacter sp. TBS_079 0.91 MPMX20_00161 Xylose operon regulatory protein 0.90 MPMX20_04329 sn-glycerol-3-phosphate-binding periplasmic protein UgpB low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS27045 XylR family transcriptional regulator 0.91 BWI76_RS26305 sn-glycerol-3-phosphate ABC transporter substrate-binding protein low > 92
Pantoea sp. MT58 0.84 IAI47_00175 XylR family transcriptional regulator 0.79 IAI47_01590 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 76
Rahnella sp. WP5 0.84 EX31_RS09745 XylR family transcriptional regulator 0.81 EX31_RS14760 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 89
Serratia liquefaciens MT49 0.82 IAI46_00300 DNA-binding transcriptional regulator 0.81 IAI46_00990 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 86
Pectobacterium carotovorum WPP14 0.82 HER17_RS21065 XylR family transcriptional regulator 0.85 HER17_RS00610 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 75
Dickeya dianthicola ME23 0.81 DZA65_RS00330 DNA-binding transcriptional regulator 0.82 DZA65_RS21665 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 75
Dickeya dianthicola 67-19 0.81 HGI48_RS00330 XylR family transcriptional regulator 0.81 HGI48_RS20650 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 71
Dickeya dadantii 3937 0.81 DDA3937_RS20915 DNA-binding transcriptional regulator 0.82 DDA3937_RS00720 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 74
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS25880 DNA-binding transcriptional regulator 0.70 QEN71_RS27605 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 153
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_03875 transcriptional regulator, AraC family 0.70 H281DRAFT_05704 glycerol 3-phosphate-binding protein low > 103
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS32830 AraC family transcriptional regulator 0.70 BPHYT_RS17455 glycerol-3-phosphate ABC transporter substrate-binding protein low > 109
Pseudomonas syringae pv. syringae B728a 0.45 Psyr_2882 transcriptional regulator, AraC family 0.21 Psyr_4502 carbohydrate ABC transporter substrate-binding protein, CUT1 family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.45 Psyr_2882 transcriptional regulator, AraC family 0.21 Psyr_4502 carbohydrate ABC transporter substrate-binding protein, CUT1 family low > 86
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS22455 AraC family transcriptional regulator 0.56 HSERO_RS18955 glycerol-3-phosphate ABC transporter substrate-binding protein low > 78
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS18215 DNA-binding transcriptional regulator 0.59 ABZR87_RS11085 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB low > 80

Not shown: 11 genomes with orthologs for ECD_03421 only; 25 genomes with orthologs for ECD_03302 only