Conservation of cofitness between ECD_03500 and ECD_03134 in Escherichia coli BL21

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03500 ribonuclease PH 1.0 ECD_03134 ssDNA-binding protein, function unknown low > 61
Escherichia coli ECRC62 1.00 BNILDI_04045 rph ribonuclease PH 0.99 BNILDI_02175 yrdD Uncharacterized protein YrdD low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00059 Ribonuclease PH 1.00 OHPLBJKB_00420 DNA topoisomerase 1 low > 73
Escherichia coli ECRC102 1.00 NIAGMN_13350 rph ribonuclease PH 1.00 NIAGMN_15315 yrdD Uncharacterized protein YrdD — —
Escherichia coli ECRC101 1.00 MCAODC_06100 rph ribonuclease PH 1.00 MCAODC_08075 yrdD Uncharacterized protein YrdD low > 87
Escherichia coli ECOR27 1.00 NOLOHH_07470 rph ribonuclease PH 0.99 NOLOHH_09345 yrdD Uncharacterized protein YrdD low > 75
Escherichia coli ECRC99 1.00 KEDOAH_12555 rph ribonuclease PH 1.00 KEDOAH_10595 yrdD Uncharacterized protein YrdD — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS20755 ribonuclease PH 0.99 ECOLIN_RS18850 type I DNA topoisomerase low > 55
Escherichia fergusonii Becca 1.00 EFB2_00170 Ribonuclease PH 0.99 EFB2_00540 DNA topoisomerase 1 low > 86
Escherichia coli ECOR38 1.00 HEPCGN_14410 rph ribonuclease PH 0.99 HEPCGN_16375 yrdD Uncharacterized protein YrdD low > 87
Escherichia coli ECRC98 1.00 JDDGAC_19215 rph ribonuclease PH 1.00 JDDGAC_21175 yrdD Uncharacterized protein YrdD low > 86
Escherichia coli ECRC100 1.00 OKFHMN_15590 rph ribonuclease PH 1.00 OKFHMN_17555 yrdD Uncharacterized protein YrdD low > 80
Escherichia coli BW25113 0.93 b3643 rph ribonuclease PH (NCBI) 1.00 b3283 yrdD predicted DNA topoisomerase (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF366 Ribonuclease PH (EC 2.7.7.56) 0.87 GFF2395 Similar to C-terminal Zn-finger domain of DNA topoisomerase I low > 78
Klebsiella michiganensis M5al 0.92 BWI76_RS27390 ribonuclease PH 0.88 BWI76_RS25655 DNA topoisomerase type IA zn finger domain-containing protein low > 92
Enterobacter sp. TBS_079 0.92 MPMX20_00092 Ribonuclease PH 0.84 MPMX20_04191 DNA topoisomerase 1 low > 85
Enterobacter asburiae PDN3 0.91 EX28DRAFT_3893 ribonuclease PH 0.85 EX28DRAFT_0044 Zn-finger domain associated with topoisomerase type I low > 76
Dickeya dadantii 3937 0.89 DDA3937_RS20540 ribonuclease PH 0.75 DDA3937_RS22495 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 74
Dickeya dianthicola ME23 0.88 DZA65_RS00730 ribonuclease PH 0.74 DZA65_RS20325 hypothetical protein low > 75
Dickeya dianthicola 67-19 0.88 HGI48_RS00675 ribonuclease PH 0.74 HGI48_RS19200 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 71
Serratia liquefaciens MT49 0.87 IAI46_24850 ribonuclease PH 0.75 IAI46_23250 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 86
Pantoea sp. MT58 0.87 IAI47_00595 ribonuclease PH 0.78 IAI47_02305 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 76
Erwinia tracheiphila SCR3 0.86 LU632_RS22020 rph ribonuclease PH 0.73 LU632_RS22455 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 74
Pectobacterium carotovorum WPP14 0.85 HER17_RS20855 ribonuclease PH 0.77 HER17_RS02240 topoisomerase DNA-binding C4 zinc finger domain-containing protein low > 75
Rahnella sp. WP5 0.85 EX31_RS14505 ribonuclease PH 0.76 EX31_RS15960 hypothetical protein low > 89
Shewanella amazonensis SB2B 0.77 Sama_0320 tRNA nucleotidyltransferase (RefSeq) 0.44 Sama_0048 topoisomerase DNA-binding C4 zinc finger domain-containing protein (RefSeq) low > 62
Shewanella loihica PV-4 0.77 Shew_3488 ribonuclease PH (RefSeq) 0.45 Shew_3731 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_01115 ribonuclease PH 0.53 CSW01_00255 DNA topoisomerase low > 62
Shewanella oneidensis MR-1 0.76 SO4256 rph ribonuclease PH (NCBI ptt file) 0.43 SO0036 topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.76 Shewana3_3777 RNAse PH (RefSeq) 0.44 Shewana3_0039 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.75 MIT1002_04071 Ribonuclease PH 0.43 MIT1002_00024 DNA topoisomerase 1 low > 70

Not shown: 58 genomes with orthologs for ECD_03500 only; 0 genomes with orthologs for ECD_03134 only