Conservation of cofitness between ECD_02630 and ECD_03030 in Escherichia coli BL21

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 1.0 ECD_03030 lipoprotein involved in osmotic sensitivity and filamentation 0.47 50
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 OHPLBJKB_00537 Lipoprotein NlpI low > 73
Escherichia coli BW25113 1.00 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 1.00 b3163 nlpI hypothetical protein (NCBI) low > 76
Escherichia coli ECRC62 0.99 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 BNILDI_01590 nlpI lipoprotein NlpI low > 75
Escherichia coli ECOR27 0.99 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 NOLOHH_09945 nlpI lipoprotein NlpI low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 ECOLIN_RS18170 lipoprotein NlpI low > 55
Escherichia coli ECRC101 0.99 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 MCAODC_08665 nlpI lipoprotein NlpI low > 87
Escherichia coli ECRC98 0.99 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 JDDGAC_21770 nlpI lipoprotein NlpI 0.58 43
Escherichia coli ECRC100 0.99 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 OKFHMN_18145 nlpI lipoprotein NlpI low > 80
Escherichia coli ECRC99 0.99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 KEDOAH_10005 nlpI lipoprotein NlpI — —
Escherichia coli ECRC102 0.99 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 NIAGMN_15905 nlpI lipoprotein NlpI — —
Escherichia coli ECOR38 0.98 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 HEPCGN_17020 nlpI lipoprotein NlpI low > 87
Escherichia fergusonii Becca 0.98 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 EFB2_00660 Lipoprotein NlpI low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.97 GFF1503 Lipoprotein nlpI precursor low > 78
Enterobacter asburiae PDN3 0.80 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.97 EX28DRAFT_3212 Lipoprotein NlpI, contains TPR repeats low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.97 MPMX20_04067 Lipoprotein NlpI low > 85
Klebsiella michiganensis M5al 0.79 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.93 BWI76_RS25060 lipoprotein NlpI low > 92
Dickeya dianthicola ME23 0.66 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.83 DZA65_RS03260 lipoprotein NlpI low > 75
Dickeya dianthicola 67-19 0.66 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.83 HGI48_RS03265 lipoprotein NlpI low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.83 DDA3937_RS03095 lipoprotein NlpI low > 74
Pectobacterium carotovorum WPP14 0.64 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.85 HER17_RS18185 lipoprotein NlpI low > 75
Pantoea sp. MT58 0.64 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 IAI47_17000 lipoprotein NlpI low > 76
Serratia liquefaciens MT49 0.63 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 IAI46_01960 lipoprotein NlpI low > 86
Rahnella sp. WP5 0.62 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.87 EX31_RS08515 lipoprotein NlpI low > 89
Erwinia tracheiphila SCR3 0.59 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.88 LU632_RS21035 nlpI lipoprotein NlpI — —
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.43 CSW01_03415 lipoprotein NlpI low > 62
Shewanella amazonensis SB2B 0.45 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.42 Sama_0967 lipoprotein NlpI (RefSeq) low > 62
Shewanella loihica PV-4 0.44 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.42 Shew_2821 lipoprotein NlpI (RefSeq) low > 60
Shewanella sp. ANA-3 0.43 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.40 Shewana3_1036 lipoprotein NlpI (RefSeq) low > 73
Shewanella oneidensis MR-1 0.43 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.39 SO_1210 lipoprotein NlpI (RefSeq) 0.52 10
Alteromonas macleodii MIT1002 0.31 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 MIT1002_01919 Lipoprotein NlpI precursor low > 70

Not shown: 66 genomes with orthologs for ECD_02630 only; 0 genomes with orthologs for ECD_03030 only