Conservation of cofitness between ECD_00884 and ECD_02591 in Escherichia coli BL21

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00884 macrolide ABC transporter peremase/ATPase 1.0 ECD_02591 RNA polymerase, sigma S (sigma 38) factor 0.59 44
Escherichia coli ECRC62 1.00 BNILDI_20455 macB macrolide ABC transporter ATP-binding protein/permease MacB 1.00 BNILDI_10860 rpoS RNA polymerase sigma factor RpoS low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02789 Macrolide export ATP-binding/permease protein MacB 1.00 OHPLBJKB_00992 RNA polymerase sigma factor RpoS low > 73
Escherichia coli ECOR38 1.00 HEPCGN_22880 macB macrolide ABC transporter ATP-binding protein/permease MacB 1.00 HEPCGN_19675 rpoS RNA polymerase sigma factor RpoS low > 87
Escherichia coli ECRC98 1.00 JDDGAC_09440 macB macrolide ABC transporter ATP-binding protein/permease MacB 1.00 JDDGAC_24160 rpoS RNA polymerase sigma factor RpoS low > 86
Escherichia coli ECRC102 1.00 NIAGMN_03845 macB macrolide ABC transporter ATP-binding protein/permease MacB 1.00 NIAGMN_18265 rpoS RNA polymerase sigma factor RpoS
Escherichia coli ECRC101 1.00 MCAODC_25020 macB macrolide ABC transporter ATP-binding protein/permease MacB 1.00 MCAODC_11020 rpoS RNA polymerase sigma factor RpoS low > 87
Escherichia coli ECRC100 1.00 OKFHMN_05805 macB macrolide ABC transporter ATP-binding protein/permease MacB 0.92 OKFHMN_20495 rpoS RNA polymerase sigma factor RpoS low > 80
Escherichia coli BW25113 1.00 b0879 macB fused macrolide transporter subunits of ABC superfamily: ATP-binding component/membrane component (NCBI) 1.00 b2741 rpoS RNA polymerase sigma factor (NCBI) low > 76
Escherichia coli ECOR27 0.99 NOLOHH_22200 macB macrolide ABC transporter ATP-binding protein/permease MacB 1.00 NOLOHH_12310 rpoS RNA polymerase sigma factor RpoS low > 75
Escherichia fergusonii Becca 0.99 EFB2_03182 Macrolide export ATP-binding/permease protein MacB 1.00 EFB2_01169 RNA polymerase sigma factor RpoS low > 86
Enterobacter sp. TBS_079 0.86 MPMX20_01541 Macrolide export ATP-binding/permease protein MacB 0.99 MPMX20_03627 RNA polymerase sigma factor RpoS low > 85
Enterobacter asburiae PDN3 0.85 EX28DRAFT_2053 ABC-type antimicrobial peptide transport system, ATPase component 0.99 EX28DRAFT_2837 RNA polymerase, sigma 38 subunit, RpoS low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.82 GFF4904 Macrolide export ATP-binding/permease protein MacB (EC 3.6.3.-) 0.99 GFF4788 RNA polymerase sigma factor RpoS low > 78
Klebsiella michiganensis M5al 0.82 BWI76_RS09600 macrolide ABC transporter permease/ATP-binding protein MacB 0.99 BWI76_RS22645 RNA polymerase sigma factor RpoS low > 92
Serratia liquefaciens MT49 0.72 IAI46_08500 macrolide ABC transporter ATP-binding protein/permease MacB 0.95 IAI46_03790 RNA polymerase sigma factor RpoS low > 86
Variovorax sp. SCN45 0.61 GFF1293 Macrolide export ATP-binding/permease protein MacB 0.34 GFF2842 RNA polymerase sigma factor RpoS low > 127
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_2618 ABC transporter:Protein of unknown function DUF214 0.64 Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_2618 ABC transporter:Protein of unknown function DUF214 0.64 Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS low > 86
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS35165 MacB family efflux pump subunit 0.38 QEN71_RS22240 RNA polymerase sigma factor RpoS low > 153
Pseudomonas fluorescens SBW25-INTG 0.56 PFLU_RS12500 MacB family efflux pump subunit 0.64 PFLU_RS06430 RNA polymerase sigma factor RpoS low > 109
Pseudomonas fluorescens SBW25 0.56 PFLU_RS12500 MacB family efflux pump subunit 0.64 PFLU_RS06430 RNA polymerase sigma factor RpoS low > 109
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS10240 macrolide ABC transporter ATP-binding protein 0.45 HSERO_RS14830 RNA polymerase sigma factor RpoS low > 78
Pseudomonas sp. RS175 0.55 PFR28_02257 Macrolide export ATP-binding/permease protein MacB 0.64 PFR28_00427 RNA polymerase sigma factor RpoS
Shewanella sp. ANA-3 0.55 Shewana3_3455 ABC transporter related (RefSeq) 0.69 Shewana3_1124 RNA polymerase, sigma 38 subunit, RpoS (RefSeq) low > 73
Pectobacterium carotovorum WPP14 0.54 HER17_RS17205 MacB family efflux pump subunit 0.92 HER17_RS04350 RNA polymerase sigma factor RpoS low > 75
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_28200 macrolide transporter 0.64 AO356_05885 RNA polymerase sigma factor RpoS low > 104
Shewanella oneidensis MR-1 0.54 SO0821 ABC transporter, ATP-binding/permease protein (NCBI ptt file) 0.69 SO3432 rpoS RNA polymerase sigma-38 factor (NCBI ptt file) low > 76
Dickeya dadantii 3937 0.51 DDA3937_RS04445 MacB family efflux pump subunit 0.93 DDA3937_RS16875 RNA polymerase sigma factor RpoS
Dickeya dianthicola ME23 0.51 DZA65_RS04320 MacB family efflux pump subunit 0.94 DZA65_RS18020 RNA polymerase sigma factor RpoS low > 75
Pseudomonas fluorescens FW300-N2E2 0.41 Pf6N2E2_19 Pyoverdine efflux carrier and ATP binding protein 0.64 Pf6N2E2_3037 RNA polymerase sigma factor RpoS low > 103
Pseudomonas simiae WCS417 0.41 PS417_17640 macrolide ABC transporter ATP-binding protein 0.64 PS417_06365 RNA polymerase sigma factor 0.16 70
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_2392 Pyoverdine efflux carrier and ATP binding protein 0.64 PfGW456L13_4674 RNA polymerase sigma factor RpoS low > 87
Pseudomonas putida KT2440 0.40 PP_4210 pyoverdine efflux carrier and ATP binding protein 0.64 PP_1623 RNA polymerase, sigma S (sigma 38) factor low > 96
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_135 Pyoverdine efflux carrier and ATP binding protein 0.64 Pf1N1B4_3115 RNA polymerase sigma factor RpoS low > 87
Alteromonas macleodii MIT1002 0.37 MIT1002_00482 Macrolide export ATP-binding/permease protein MacB 0.71 MIT1002_00625 RNA polymerase sigma factor RpoS low > 70

Not shown: 9 genomes with orthologs for ECD_00884 only; 19 genomes with orthologs for ECD_02591 only