Conservation of cofitness between ECD_02445 and ECD_00601 in Escherichia coli BL21

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02445 regulatory protein P-II for glutamine synthetase 1.0 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) 0.45 44
Escherichia coli ECRC101 1.00 MCAODC_12030 glnB nitrogen regulatory protein P-II 1.00 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 87
Escherichia coli Nissle 1917 1.00 ECOLIN_RS14450 nitrogen regulatory protein P-II 1.00 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECOR27 1.00 NOLOHH_13175 glnB nitrogen regulatory protein P-II 1.00 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 75
Escherichia coli ECRC100 1.00 OKFHMN_21500 glnB nitrogen regulatory protein P-II 1.00 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 80
Escherichia coli ECRC102 1.00 NIAGMN_19270 glnB nitrogen regulatory protein P-II 1.00 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01154 Nitrogen regulatory protein P-II 1 1.00 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.00 GFF2454 Nitrogen regulatory protein P-II 0.97 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 78
Escherichia coli ECRC99 1.00 KEDOAH_06720 glnB nitrogen regulatory protein P-II 1.00 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia fergusonii Becca 1.00 EFB2_01343 Nitrogen regulatory protein P-II 1 1.00 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Escherichia coli ECOR38 1.00 HEPCGN_20645 glnB nitrogen regulatory protein P-II 1.00 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 87
Escherichia coli ECRC98 1.00 JDDGAC_25165 glnB nitrogen regulatory protein P-II 1.00 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 86
Escherichia coli ECRC62 1.00 BNILDI_11975 glnB nitrogen regulatory protein P-II 1.00 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 75
Escherichia coli BW25113 1.00 b2553 glnB regulatory protein P-II for glutamine synthetase (NCBI) 1.00 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) low > 76
Enterobacter sp. TBS_079 0.99 MPMX20_03422 Nitrogen regulatory protein P-II 0.96 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA low > 85
Enterobacter asburiae PDN3 0.99 EX28DRAFT_0097 nitrogen regulatory protein P-II family 0.92 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase low > 76
Klebsiella michiganensis M5al 0.99 BWI76_RS21245 nitrogen regulatory protein P-II 0.91 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Dickeya dadantii 3937 0.97 DDA3937_RS15635 nitrogen regulatory protein P-II 0.80 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Erwinia tracheiphila SCR3 0.96 LU632_RS17925 glnB nitrogen regulatory protein P-II 0.83 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 74
Dickeya dianthicola 67-19 0.96 HGI48_RS15730 nitrogen regulatory protein P-II 0.79 HGI48_RS06200 D-alanyl-D-alanine carboxypeptidase DacA low > 71
Dickeya dianthicola ME23 0.96 DZA65_RS16810 nitrogen regulatory protein P-II 0.79 DZA65_RS06545 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Pectobacterium carotovorum WPP14 0.95 HER17_RS05930 nitrogen regulatory protein P-II 0.82 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Pantoea sp. MT58 0.95 IAI47_04950 nitrogen regulatory protein P-II 0.84 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA low > 76
Serratia liquefaciens MT49 0.95 IAI46_19450 nitrogen regulatory protein P-II 0.85 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Rahnella sp. WP5 0.94 EX31_RS20610 nitrogen regulatory protein P-II 0.83 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA 0.27 72
Vibrio cholerae E7946 ATCC 55056 0.89 CSW01_11410 nitrogen regulatory protein P-II 0.53 CSW01_04845 D-alanyl-D-alanine carboxypeptidase low > 62
Shewanella oneidensis MR-1 0.85 SO3519 glnB-2 nitrogen regulatory protein P-II 1 (NCBI ptt file) 0.51 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.85 Shewana3_3124 nitrogen regulatory protein P-II (RefSeq) 0.51 Shewana3_0991 penicillin-binding protein 6 (RefSeq) low > 73
Shewanella amazonensis SB2B 0.84 Sama_0935 nitrogen regulatory protein P-II (RefSeq) 0.50 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Shewanella loihica PV-4 0.83 Shew_1110 nitrogen regulatory protein P-II (RefSeq) 0.51 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) low > 60

Not shown: 49 genomes with orthologs for ECD_02445 only; 1 genomes with orthologs for ECD_00601 only