Conservation of cofitness between CSW01_19550 and CSW01_18780 in Vibrio cholerae E7946 ATCC 55056

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_19550 chemotaxis protein CheA 1.0 CSW01_18780 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.68 2
Shewanella loihica PV-4 0.42 Shew_0113 CheA signal transduction histidine kinase (RefSeq) 0.57 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.40 Sama_3495 putative CheA signal transduction histidine kinase (RefSeq) 0.59 Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) low > 62
Shewanella sp. ANA-3 0.32 Shewana3_2218 CheA signal transduction histidine kinases (RefSeq) 0.59 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) low > 73
Erwinia tracheiphila HP pepo 2.2 0.32 IJEDHG_24400 cheA chemotaxis protein CheA 0.54 IJEDHG_20140 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 61
Erwinia tracheiphila SCR3 0.32 LU632_RS13560 cheA chemotaxis protein CheA 0.54 LU632_RS09660 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 73
Serratia liquefaciens MT49 0.32 IAI46_16040 chemotaxis protein CheA 0.54 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 87
Escherichia coli BL21 0.32 ECD_01859 fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein 0.54 ECD_00864 23S rRNA m(5)U747 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC62 0.31 BNILDI_15350 cheA chemotaxis protein CheA 0.54 BNILDI_20560 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 75
Escherichia fergusonii Becca 0.31 EFB2_02055 Chemotaxis protein CheA 0.55 EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_01840 Chemotaxis protein CheA 0.55 OHPLBJKB_02809 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 74
Shewanella oneidensis MR-1 0.31 SO2121 cheA chemotaxis protein CheA (NCBI ptt file) 0.60 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) low > 76
Escherichia coli ECOR27 0.31 NOLOHH_16560 cheA chemotaxis protein CheA 0.55 NOLOHH_22305 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 76
Escherichia coli BW25113 0.31 b1888 cheA fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein (NCBI) 0.54 b0859 rumB 23S rRNA m(5)U747-methyltransferase (NCBI) low > 76
Escherichia coli ECRC98 0.31 JDDGAC_00695 cheA chemotaxis protein CheA 0.54 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 87
Escherichia coli ECRC101 0.31 MCAODC_19285 cheA chemotaxis protein CheA 0.55 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 87
Escherichia coli ECRC102 0.31 NIAGMN_01940 cheA chemotaxis protein CheA 0.55 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 80
Escherichia coli ECRC99 0.31 KEDOAH_01985 cheA chemotaxis protein CheA 0.55 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC — —
Escherichia coli ECOR38 0.31 HEPCGN_04540 cheA chemotaxis protein CheA 0.55 HEPCGN_02095 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 88
Escherichia coli ECRC100 0.31 OKFHMN_26120 cheA chemotaxis protein CheA 0.55 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 79
Escherichia coli Nissle 1917 0.31 ECOLIN_RS10780 chemotaxis protein CheA 0.55 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF1669 Signal transduction histidine kinase CheA (EC 2.7.3.-) 0.51 GFF763 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-) low > 78
Pectobacterium carotovorum WPP14 0.31 HER17_RS08100 chemotaxis protein CheA 0.52 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 75
Dickeya dadantii 3937 0.30 DDA3937_RS13545 chemotaxis protein CheA 0.53 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 74
Dickeya dianthicola ME23 0.30 DZA65_RS14075 chemotaxis protein CheA 0.52 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 75
Dickeya dianthicola 67-19 0.30 HGI48_RS13590 chemotaxis protein CheA 0.52 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 71
Pantoea agglomerans CFBP13505 P0401 0.28 PagCFBP13505_RS02180 chemotaxis protein CheA 0.54 PagCFBP13505_RS04310 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 74
Pantoea sp. MT58 0.27 IAI47_08300 chemotaxis protein CheA 0.55 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 76
Rahnella sp. WP5 0.27 EX31_RS11405 chemotaxis protein CheA 0.51 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 89
Enterobacter sp. TBS_079 0.05 MPMX20_02798 Chemotaxis protein CheA 0.53 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC low > 85
Enterobacter asburiae PDN3 0.05 EX28DRAFT_0662 Chemotaxis protein histidine kinase and related kinases 0.53 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB low > 76

Not shown: 45 genomes with orthologs for CSW01_19550 only; 4 genomes with orthologs for CSW01_18780 only