| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_16820 | | PTS fructose transporter subunit IIBC | 1.0 | CSW01_18290 | | phenylalanine 4-monooxygenase | 0.47 | 8 |
| Pseudomonas fluorescens GW456-L13 | 0.61 | PfGW456L13_5073 | | PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) | 0.58 | PfGW456L13_4394 | | Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.60 | AO353_05475 | | PTS fructose transporter subunit IIBC | 0.57 | AO353_18585 | | Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.60 | Pf6N2E2_3337 | | PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) | 0.57 | Pf6N2E2_2630 | | Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) | low | > 103 |
| Pseudomonas sp. RS175 | 0.60 | PFR28_00107 | | hypothetical protein | 0.57 | PFR28_00802 | | Phenylalanine-4-hydroxylase | low | > 88 |
| Pseudomonas sp. DMC3 | 0.60 | GFF5005 | | PTS system fructose-specific EIIB'BC component | 0.58 | GFF2414 | | Phenylalanine-4-hydroxylase | low | > 89 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_0823 | | PTS system D-fructose-specific IIB component (F1P-forming), Frc family / PTS system D-fructose-specific IIC component (F1P-forming), Frc family | 0.61 | Psyr_3575 | | Phenylalanine 4-hydroxylase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_0823 | | PTS system D-fructose-specific IIB component (F1P-forming), Frc family / PTS system D-fructose-specific IIC component (F1P-forming), Frc family | 0.61 | Psyr_3575 | | Phenylalanine 4-hydroxylase | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.59 | Pf1N1B4_1144 | | PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) | 0.58 | Pf1N1B4_3566 | | Phenylalanine-4-hydroxylase (EC 1.14.16.1) | low | > 87 |
| Pseudomonas sp. SVBP6 | 0.59 | COO64_RS11285 | | PTS fructose-like transporter subunit IIB | 0.57 | COO64_RS21660 | phhA | phenylalanine 4-monooxygenase | low | > 93 |
| Pseudomonas fluorescens FW300-N2C3 | 0.58 | AO356_07325 | | fructose phosphotransferase system, IIB/IIC components (EC 2.7.1.202) (from data) | 0.57 | AO356_03975 | | Phenylalanine 4-monooxygenase (EC 1.14.16.1) (from data) | low | > 104 |
| Pseudomonas lactucae CFBP13502 | 0.58 | GEMAOFIL_00999 | | 'PTS system fructose-specific EIIB'BC component' transl_table=11 | 0.57 | GEMAOFIL_04178 | | Phenylalanine-4-hydroxylase | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.58 | Psest_3353 | | PTS system, fructose-specific, IIB component/PTS system, fructose subfamily, IIC component | 0.60 | Psest_0781 | | phenylalanine-4-hydroxylase, monomeric form | low | > 67 |
| Pseudomonas orientalis W4I3 | 0.57 | QF045_RS06950 | | PTS fructose-like transporter subunit IIB | 0.57 | QF045_RS22030 | | phenylalanine 4-monooxygenase | low | > 93 |
| Pseudomonas fluorescens SBW25-INTG | 0.57 | PFLU_RS04020 | | PTS fructose-like transporter subunit IIB | 0.57 | PFLU_RS21870 | | phenylalanine 4-monooxygenase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.57 | PFLU_RS04020 | | PTS fructose-like transporter subunit IIB | 0.57 | PFLU_RS21870 | | phenylalanine 4-monooxygenase | low | > 109 |
| Pseudomonas sp. BP01 | 0.57 | JOY50_RS19305 | | PTS fructose-like transporter subunit IIB | 0.58 | JOY50_RS01025 | phhA | phenylalanine 4-monooxygenase | low | > 84 |
| Pseudomonas simiae WCS417 | 0.56 | PS417_03975 | | FruA | 0.58 | PS417_19900 | | phenylalanine 4-monooxygenase | low | > 88 |
| Pseudomonas putida KT2440 | 0.55 | PP_0795 | | fructose PTS permease - IIBC component | 0.58 | PP_4490 | | phenylalanine-4-hydroxylase | low | > 96 |
| Pseudomonas aeruginosa PA14 | 0.51 | IKLFDK_18170 | | PTS fructose-like transporter subunit IIB | 0.57 | IKLFDK_03865 | | phenylalanine 4-monooxygenase | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.51 | DQ20_RS41935 | | PTS fructose-like transporter subunit IIB | 0.58 | DQ20_RS44690 | phhA;go_function=phenylalanine | phenylalanine 4-monooxygenase | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.51 | DY961_RS15210 | | PTS fructose-like transporter subunit IIB | 0.58 | DY961_RS08120 | phhA;go_function=phenylalanine | phenylalanine 4-monooxygenase | low | > 100 |
| Sphingobium sp. HT1-2 | 0.37 | GFF5032 | | PTS system, inactive IIB catalytic domain / PTS system, fructose-specific IIB component (EC 2.7.1.202) / PTS system, fructose-specific IIC component | 0.33 | GFF5065 | | Phenylalanine-4-hydroxylase (EC 1.14.16.1) | low | > 95 |
Not shown: 40 genomes with orthologs for CSW01_16820 only; 15 genomes with orthologs for CSW01_18290 only