| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_01845 | | protease modulator HflK | 1.0 | CSW01_13505 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.75 | 4 |
| Shewanella loihica PV-4 | 0.50 | Shew_0568 | | HflK protein (RefSeq) | 0.24 | Shew_2558 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) | low | > 60 |
| Escherichia fergusonii Becca | 0.49 | EFB2_04361 | | Modulator of FtsH protease HflK | 0.46 | EFB2_04688 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | low | > 86 |
| Escherichia coli ECOR38 | 0.49 | HEPCGN_10475 | hflK | FtsH protease activity modulator HflK | 0.47 | HEPCGN_12390 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 88 |
| Escherichia coli Nissle 1917 | 0.49 | ECOLIN_RS24240 | | FtsH protease activity modulator HflK | 0.46 | ECOLIN_RS22630 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 55 |
| Escherichia coli ECOR27 | 0.48 | NOLOHH_04510 | hflK | FtsH protease activity modulator HflK | 0.47 | NOLOHH_05890 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.44 | 62 |
| Escherichia coli BL21 | 0.48 | ECD_04041 | | modulator for HflB protease specific for phage lambda cII repressor | 0.47 | ECD_03815 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | low | > 61 |
| Escherichia coli ECRC100 | 0.48 | OKFHMN_12245 | hflK | FtsH protease activity modulator HflK | 0.47 | OKFHMN_13745 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 79 |
| Escherichia coli ECRC62 | 0.48 | BNILDI_06980 | hflK | FtsH protease activity modulator HflK | 0.47 | BNILDI_05640 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.48 | OHPLBJKB_03868 | | Modulator of FtsH protease HflK | 0.47 | OHPLBJKB_04121 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | low | > 74 |
| Escherichia coli ECRC98 | 0.48 | JDDGAC_15885 | hflK | FtsH protease activity modulator HflK | 0.47 | JDDGAC_17370 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 87 |
| Escherichia coli ECRC102 | 0.48 | NIAGMN_10095 | hflK | FtsH protease activity modulator HflK | 0.47 | NIAGMN_11500 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | — | — |
| Escherichia coli BW25113 | 0.48 | b4174 | hflK | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | 0.47 | b3930 | menA | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.48 | MCAODC_02760 | hflK | FtsH protease activity modulator HflK | 0.47 | MCAODC_04245 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 87 |
| Klebsiella pneumoniae MKP103 | 0.48 | KDGMDA_11045 | | FtsH protease activity modulator HflK | 0.44 | KDGMDA_09255 | | 1 4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 95 |
| Escherichia coli ECRC99 | 0.48 | KEDOAH_15910 | hflK | FtsH protease activity modulator HflK | 0.47 | KEDOAH_14415 | menA | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | — | — |
| Enterobacter asburiae PDN3 | 0.48 | EX28DRAFT_3371 | | HflK protein | 0.47 | EX28DRAFT_4403 | | 1,4-dihydroxy-2-naphthoate prenyltransferase (EC 2.5.1.74) | low | > 76 |
| Dickeya dadantii 3937 | 0.48 | DDA3937_RS18600 | | FtsH protease activity modulator HflK | 0.46 | DDA3937_RS00910 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.48 | GFF827 | | HflK protein | 0.45 | GFF2312 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74) | low | > 78 |
| Dickeya dianthicola ME23 | 0.48 | DZA65_RS19670 | | FtsH protease activity modulator HflK | 0.49 | DZA65_RS21510 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.48 | HGI48_RS18535 | | FtsH protease activity modulator HflK | 0.49 | HGI48_RS20465 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | 0.66 | 21 |
| Shewanella amazonensis SB2B | 0.47 | Sama_3023 | | hflK protein (RefSeq) | 0.25 | Sama_1366 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.46 | LU632_RS02065 | hflK | FtsH protease activity modulator HflK | 0.41 | LU632_RS19680 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.46 | HER17_RS02595 | | FtsH protease activity modulator HflK | 0.44 | HER17_RS00845 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 75 |
| Erwinia tracheiphila HP pepo 2.2 | 0.46 | IJEDHG_06855 | hflK | FtsH protease activity modulator HflK | 0.41 | IJEDHG_12980 | | 1 4-dihydroxy-2-naphthoate polyprenyltransferase | — | — |
| Enterobacter sp. TBS_079 | 0.46 | MPMX20_00455 | | Modulator of FtsH protease HflK | 0.45 | MPMX20_04539 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | low | > 85 |
| Klebsiella michiganensis M5al | 0.45 | BWI76_RS02545 | | protease modulator HflK | 0.46 | BWI76_RS00745 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 92 |
| Serratia liquefaciens MT49 | 0.45 | IAI46_01635 | | FtsH protease activity modulator HflK | 0.44 | IAI46_24580 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 87 |
| Rahnella sp. WP5 | 0.45 | EX31_RS08810 | | FtsH protease activity modulator HflK | 0.41 | EX31_RS14250 | | 1,4-dihydroxy-2-naphthoate polyprenyltransferase | low | > 89 |
| Dechlorosoma suillum PS | 0.35 | Dsui_3135 | | HflK protein | 0.21 | Dsui_3320 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase | — | — |
| Rhodospirillum rubrum S1H | 0.26 | Rru_A2203 | | HflK (NCBI) | 0.16 | Rru_A3388 | | 1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI) | — | — |
Not shown: 58 genomes with orthologs for CSW01_01845 only; 7 genomes with orthologs for CSW01_13505 only