Conservation of cofitness between CSW01_05205 and CSW01_05795 in Vibrio cholerae E7946 ATCC 55056

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05205 hypothetical protein 1.0 CSW01_05795 cold-shock protein CspD 0.51 3
Pantoea sp. MT58 0.51 IAI47_13500 uridine diphosphate-N-acetylglucosamine-binding protein YvcK 0.70 IAI47_12955 cold shock-like protein CspD low > 76
Pantoea agglomerans CFBP13505 P0401 0.50 PagCFBP13505_RS03810 uridine diphosphate-N-acetylglucosamine-binding protein YvcK 0.71 PagCFBP13505_RS04375 cold shock-like protein CspD low > 74
Dickeya dadantii 3937 0.49 DDA3937_RS08540 uridine diphosphate-N-acetylglucosamine-binding protein YvcK 0.73 DDA3937_RS09550 cold shock-like protein CspD low > 74
Klebsiella michiganensis M5al 0.49 BWI76_RS08805 gluconeogenesis factor 0.74 BWI76_RS09605 cold-shock protein — —
Klebsiella pneumoniae MKP103 0.49 KDGMDA_17075 2-phospho-L-lactate transferase CofD 0.75 KDGMDA_17850 cold shock-like protein CspD — —
Shewanella sp. ANA-3 0.49 Shewana3_2120 hypothetical protein (RefSeq) 0.68 Shewana3_1751 cold-shock DNA-binding protein family protein (RefSeq) low > 73
Dickeya dianthicola 67-19 0.48 HGI48_RS08700 uridine diphosphate-N-acetylglucosamine-binding protein YvcK 0.73 HGI48_RS09565 cold shock-like protein CspD low > 71
Rahnella sp. WP5 0.48 EX31_RS23735 uridine diphosphate-N-acetylglucosamine-binding protein YvcK 0.71 EX31_RS18570 cold shock-like protein CspD low > 89
Escherichia coli ECOR38 0.48 HEPCGN_01665 ybhK Putative gluconeogenesis factor 0.74 HEPCGN_22885 cspD cold shock-like protein CspD low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.48 OHPLBJKB_02933 Putative gluconeogenesis factor 0.74 OHPLBJKB_02788 Cold shock-like protein CspD — —
Escherichia coli ECRC62 0.48 BNILDI_21010 ybhK Putative gluconeogenesis factor 0.74 BNILDI_20450 cspD cold shock-like protein CspD low > 75
Escherichia coli Nissle 1917 0.48 ECOLIN_RS04155 uridine diphosphate-N-acetylglucosamine-binding protein YvcK 0.74 ECOLIN_RS04685 cold shock-like protein CspD — —
Escherichia coli BW25113 0.48 b0780 ybhK predicted transferase with NAD(P)-binding Rossmann-fold domain (NCBI) 0.74 b0880 cspD cold shock protein homolog (NCBI) low > 76
Escherichia coli ECRC100 0.48 OKFHMN_06375 ybhK Putative gluconeogenesis factor 0.74 OKFHMN_05800 cspD cold shock-like protein CspD — —
Escherichia coli ECRC101 0.48 MCAODC_25590 ybhK Putative gluconeogenesis factor 0.74 MCAODC_25015 cspD cold shock-like protein CspD low > 87
Escherichia coli ECRC102 0.48 NIAGMN_04420 ybhK Putative gluconeogenesis factor 0.74 NIAGMN_03840 cspD cold shock-like protein CspD low > 80
Shewanella oneidensis MR-1 0.48 SO2351 conserved hypothetical protein (NCBI ptt file) 0.68 SO2628 cspD stress response protein CspD (NCBI ptt file) low > 76
Escherichia coli ECOR27 0.48 NOLOHH_22740 ybhK Putative gluconeogenesis factor 0.74 NOLOHH_22195 cspD cold shock-like protein CspD low > 76
Escherichia coli ECRC98 0.48 JDDGAC_10010 ybhK Putative gluconeogenesis factor 0.74 JDDGAC_09435 cspD cold shock-like protein CspD low > 87
Escherichia fergusonii Becca 0.48 EFB2_03325 Putative gluconeogenesis factor 0.74 EFB2_03181 Cold shock-like protein CspD low > 86
Escherichia coli ECRC99 0.48 KEDOAH_21535 ybhK Putative gluconeogenesis factor 0.74 KEDOAH_22110 cspD cold shock-like protein CspD — —
Escherichia coli BL21 0.48 ECD_00747 putative CofD superfamily transferase 0.74 ECD_00885 inhibitor of DNA replication, cold shock protein-like protein — —
Enterobacter asburiae PDN3 0.48 EX28DRAFT_2210 conserved hypothetical protein, cofD-related 0.74 EX28DRAFT_2052 cold shock domain protein CspD low > 76
Dickeya dianthicola ME23 0.47 DZA65_RS08995 uridine diphosphate-N-acetylglucosamine-binding protein YvcK 0.73 DZA65_RS09875 cold shock-like protein CspD low > 75
Enterobacter sp. TBS_079 0.47 MPMX20_01409 Putative gluconeogenesis factor 0.74 MPMX20_01542 Cold shock-like protein CspD low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF677 Putative structural protein 0.75 GFF4903 Cold shock protein CspD — —
Serratia liquefaciens MT49 0.45 IAI46_06560 uridine diphosphate-N-acetylglucosamine-binding protein YvcK 0.76 IAI46_08505 cold shock-like protein CspD low > 87
Shewanella amazonensis SB2B 0.45 Sama_1804 hypothetical protein (RefSeq) 0.69 Sama_2058 cold-shock DNA-binding domain-containing protein (RefSeq) low > 62
Shewanella loihica PV-4 0.44 Shew_1998 protein of unknown function UPF0052 and CofD (RefSeq) 0.70 Shew_1564 cold-shock DNA-binding domain-containing protein (RefSeq) low > 60
Pectobacterium carotovorum WPP14 0.44 HER17_RS13410 uridine diphosphate-N-acetylglucosamine-binding protein YvcK 0.71 HER17_RS12410 cold shock-like protein CspD low > 75

Not shown: 3 genomes with orthologs for CSW01_05205 only; 25 genomes with orthologs for CSW01_05795 only