Conservation of cofitness between CSW01_07520 and CSW01_03695 in Vibrio cholerae E7946 ATCC 55056

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07520 RNA chaperone ProQ 1.0 CSW01_03695 ribosomal large subunit pseudouridine synthase D 0.63 19
Dickeya dianthicola 67-19 0.55 HGI48_RS12060 RNA chaperone ProQ 0.70 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 71
Dickeya dianthicola ME23 0.55 DZA65_RS12510 RNA chaperone ProQ 0.70 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli BW25113 0.55 b1831 proQ putative solute/DNA competence effector (NCBI) 0.70 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) — —
Dickeya dadantii 3937 0.54 DDA3937_RS11970 RNA chaperone ProQ 0.70 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Escherichia coli BL21 0.54 ECD_01802 RNA chaperone, putative ProP translation regulator 0.70 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase low > 61
Serratia liquefaciens MT49 0.54 IAI46_10795 RNA chaperone ProQ 0.70 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli ECRC100 0.54 OKFHMN_26460 proQ RNA chaperone ProQ 0.70 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 79
Escherichia coli ECRC102 0.54 NIAGMN_01600 proQ RNA chaperone ProQ 0.70 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 80
Escherichia coli ECRC101 0.54 MCAODC_18945 proQ RNA chaperone ProQ 0.70 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Erwinia amylovora T8 0.54 OLJFJH_13005 RNA chaperone ProQ 0.70 OLJFJH_09725 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECRC62 0.54 BNILDI_15765 proQ RNA chaperone ProQ 0.71 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Escherichia coli ECRC99 0.54 KEDOAH_01645 proQ RNA chaperone ProQ 0.70 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_01900 RNA chaperone ProQ 0.70 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D low > 74
Escherichia coli ECOR27 0.54 NOLOHH_16970 proQ RNA chaperone ProQ 0.71 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Escherichia coli ECRC98 0.54 JDDGAC_01035 proQ RNA chaperone ProQ 0.70 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli Nissle 1917 0.54 ECOLIN_RS10195 RNA chaperone ProQ 0.70 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 55
Escherichia coli ECOR38 0.54 HEPCGN_04860 proQ RNA chaperone ProQ 0.70 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 88
Enterobacter asburiae PDN3 0.54 EX28DRAFT_0725 Activator of osmoprotectant transporter ProP 0.70 EX28DRAFT_2695 pseudouridine synthase, RluA family low > 76
Enterobacter sp. TBS_079 0.54 MPMX20_02738 RNA chaperone ProQ 0.70 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D low > 85
Escherichia fergusonii Becca 0.54 EFB2_02170 RNA chaperone ProQ 0.70 EFB2_01296 Ribosomal large subunit pseudouridine synthase D low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF2846 ProQ: influences osmotic activation of compatible solute ProP 0.70 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 78
Klebsiella michiganensis M5al 0.53 BWI76_RS17980 RNA chaperone ProQ 0.69 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase low > 92
Rahnella sp. WP5 0.52 EX31_RS24875 RNA chaperone ProQ 0.69 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.49 64
Pantoea agglomerans CFBP13505 P0401 0.52 PagCFBP13505_RS02530 RNA chaperone ProQ 0.70 PagCFBP13505_RS16540 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Pantoea sp. MT58 0.52 IAI47_08700 RNA chaperone ProQ 0.70 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Klebsiella pneumoniae MKP103 0.51 KDGMDA_25250 RNA chaperone ProQ 0.70 KDGMDA_02140 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 95
Erwinia tracheiphila SCR3 0.50 LU632_RS13255 proQ RNA chaperone ProQ 0.68 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 73
Erwinia tracheiphila HP pepo 2.2 0.50 IJEDHG_22320 proQ RNA chaperone ProQ 0.68 IJEDHG_26870 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Shewanella amazonensis SB2B 0.50 Sama_1584 putative solute/DNA competence effector (RefSeq) 0.59 Sama_2605 pseudouridylate synthase (RefSeq) — —
Pectobacterium carotovorum WPP14 0.50 HER17_RS11695 RNA chaperone ProQ 0.71 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Shewanella loihica PV-4 0.49 Shew_1801 putative solute/DNA competence effector (RefSeq) 0.60 Shew_2950 RluA family pseudouridine synthase (RefSeq) low > 60
Shewanella sp. ANA-3 0.45 Shewana3_1777 putative solute/DNA competence effector (RefSeq) 0.60 Shewana3_3171 ribosomal large subunit pseudouridine synthase D (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.43 MIT1002_02024 ProP effector 0.59 MIT1002_02679 Ribosomal large subunit pseudouridine synthase D low > 70

Not shown: 1 genomes with orthologs for CSW01_07520 only; 79 genomes with orthologs for CSW01_03695 only