Conservation of cofitness between CSW01_01985 and CSW01_03515 in Vibrio cholerae E7946 ATCC 55056

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01985 tRNA dihydrouridine(20/20a) synthase DusA 1.0 CSW01_03515 DNA mismatch repair protein MutH 0.46 5
Serratia liquefaciens MT49 0.77 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA 0.67 IAI46_20460 DNA mismatch repair endonuclease MutH low > 86
Erwinia amylovora T8 0.76 OLJFJH_03475 tRNA dihydrouridine(20/20a) synthase DusA 0.65 OLJFJH_09040 DNA mismatch repair endonuclease MutH low > 58
Rahnella sp. WP5 0.76 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA 0.66 EX31_RS13210 DNA mismatch repair endonuclease MutH low > 89
Pantoea sp. MT58 0.76 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA 0.64 IAI47_03910 DNA mismatch repair endonuclease MutH low > 76
Klebsiella michiganensis M5al 0.75 BWI76_RS01900 tRNA-dihydrouridine synthase A 0.64 BWI76_RS23290 DNA mismatch repair protein MutH low > 92
Escherichia coli ECRC100 0.75 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.65 OKFHMN_19990 mutH DNA mismatch repair endonuclease MutH low > 80
Escherichia coli ECRC98 0.75 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.65 JDDGAC_23655 mutH DNA mismatch repair endonuclease MutH low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase 0.64 OHPLBJKB_00898 DNA mismatch repair protein MutH low > 73
Escherichia coli ECRC99 0.75 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.65 KEDOAH_08140 mutH DNA mismatch repair endonuclease MutH — —
Escherichia coli ECRC102 0.75 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.65 NIAGMN_17760 mutH DNA mismatch repair endonuclease MutH — —
Escherichia coli ECRC62 0.75 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.64 BNILDI_10355 mutH DNA mismatch repair endonuclease MutH low > 75
Escherichia coli ECOR38 0.75 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.65 HEPCGN_19245 mutH DNA mismatch repair endonuclease MutH low > 87
Pectobacterium carotovorum WPP14 0.75 HER17_RS03680 tRNA dihydrouridine(20/20a) synthase DusA 0.66 HER17_RS16590 DNA mismatch repair endonuclease MutH low > 75
Escherichia coli ECOR27 0.75 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.65 NOLOHH_11875 mutH DNA mismatch repair endonuclease MutH low > 75
Escherichia coli BW25113 0.75 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) 0.64 b2831 mutH DNA mismatch repair protein (NCBI) low > 76
Escherichia coli BL21 0.75 ECD_03921 tRNA-dihydrouridine synthase A 0.64 ECD_02679 methyl-directed mismatch repair protein low > 61
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF1418 tRNA dihydrouridine synthase A (EC 1.-.-.-) 0.66 GFF1314 DNA mismatch repair endonuclease MutH low > 78
Escherichia coli Nissle 1917 0.75 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA 0.64 ECOLIN_RS15895 DNA mismatch repair endonuclease MutH low > 55
Dickeya dadantii 3937 0.75 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA 0.63 DDA3937_RS04940 DNA mismatch repair endonuclease MutH low > 74
Enterobacter asburiae PDN3 0.75 EX28DRAFT_4263 tRNA dihydrouridine synthase A 0.67 EX28DRAFT_2906 DNA mismatch repair protein MutH low > 76
Escherichia fergusonii Becca 0.75 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase 0.65 EFB2_01052 DNA mismatch repair protein MutH low > 86
Escherichia coli ECRC101 0.75 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.65 MCAODC_10515 mutH DNA mismatch repair endonuclease MutH low > 87
Dickeya dianthicola ME23 0.75 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA 0.63 DZA65_RS05285 DNA mismatch repair endonuclease MutH low > 75
Enterobacter sp. TBS_079 0.75 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase 0.66 MPMX20_03694 DNA mismatch repair protein MutH low > 85
Dickeya dianthicola 67-19 0.74 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA 0.63 HGI48_RS04950 DNA mismatch repair endonuclease MutH — —
Shewanella sp. ANA-3 0.73 Shewana3_0718 tRNA-dihydrouridine synthase A (RefSeq) 0.61 Shewana3_3044 DNA mismatch repair protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.72 SO3912 TIM-barrel protein, yjbN family (NCBI ptt file) 0.62 SO1330 mutH DNA mismatch repair protein MutH (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.72 Shew_0536 tRNA-dihydrouridine synthase A (RefSeq) 0.60 Shew_1037 DNA mismatch repair protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.71 Sama_3055 tRNA-dihydrouridine synthase A (RefSeq) 0.59 Sama_0862 DNA mismatch repair protein (RefSeq) low > 62
Erwinia tracheiphila SCR3 0.69 LU632_RS23765 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.68 LU632_RS06095 mutH DNA mismatch repair endonuclease MutH low > 74
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_2018 tRNA dihydrouridine synthase A 0.51 B158DRAFT_0550 DNA mismatch repair protein MutH low > 40
Alteromonas macleodii MIT1002 0.58 MIT1002_03387 putative tRNA-dihydrouridine synthase 0.53 MIT1002_00646 Methyl-directed mismatch repair protein low > 70

Not shown: 59 genomes with orthologs for CSW01_01985 only; 0 genomes with orthologs for CSW01_03515 only