Conservation of cofitness between CSW01_12325 and CSW01_03475 in Vibrio cholerae E7946 ATCC 55056

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12325 dehydrogenase 1.0 CSW01_03475 ATP-dependent RNA helicase SrmB 0.52 1
Pantoea sp. MT58 0.49 IAI47_03145 DUF1249 family protein 0.60 IAI47_04835 ATP-dependent RNA helicase SrmB low > 76
Pantoea agglomerans CFBP13505 P0401 0.49 PagCFBP13505_RS11965 DUF1249 family protein 0.59 PagCFBP13505_RS14725 ATP-dependent RNA helicase SrmB low > 74
Serratia liquefaciens MT49 0.49 IAI46_21935 DUF1249 family protein 0.58 IAI46_19600 ATP-dependent RNA helicase SrmB low > 87
Enterobacter sp. TBS_079 0.49 MPMX20_03880 hypothetical protein 0.57 MPMX20_03447 ATP-dependent RNA helicase SrmB low > 85
Erwinia amylovora T8 0.49 OLJFJH_07685 DUF1249 domain-containing protein 0.59 OLJFJH_10200 ATP-dependent RNA helicase SrmB low > 58
Rahnella sp. WP5 0.48 EX31_RS25980 DUF1249 family protein 0.58 EX31_RS21785 ATP-dependent RNA helicase SrmB low > 89
Enterobacter asburiae PDN3 0.48 EX28DRAFT_3071 Uncharacterized protein conserved in bacteria 0.57 EX28DRAFT_0069 Superfamily II DNA and RNA helicases low > 76
Pectobacterium carotovorum WPP14 0.48 HER17_RS19815 DUF1249 family protein 0.57 HER17_RS05765 ATP-dependent RNA helicase SrmB low > 75
Klebsiella pneumoniae MKP103 0.48 KDGMDA_05215 DUF1249 domain-containing protein 0.56 KDGMDA_28495 ATP-dependent RNA helicase SrmB low > 95
Klebsiella michiganensis M5al 0.48 BWI76_RS24390 hypothetical protein 0.58 BWI76_RS21370 ATP-dependent RNA helicase SrmB low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF3147 FIG074102: hypothetical protein 0.57 GFF2104 ATP-dependent RNA helicase SrmB low > 78
Escherichia coli ECOR27 0.47 NOLOHH_10620 yqiB DUF1249 domain-containing protein 0.56 NOLOHH_13035 srmB ATP-dependent RNA helicase SrmB low > 76
Escherichia coli ECRC100 0.47 OKFHMN_18815 yqiB DUF1249 domain-containing protein 0.56 OKFHMN_21360 srmB ATP-dependent RNA helicase SrmB low > 79
Escherichia coli ECRC102 0.47 NIAGMN_16580 yqiB DUF1249 domain-containing protein 0.56 NIAGMN_19130 srmB ATP-dependent RNA helicase SrmB low > 80
Escherichia coli BW25113 0.47 b3033 yqiB predicted dehydrogenase (NCBI) 0.56 b2576 srmB ATP-dependent RNA helicase (NCBI) low > 76
Escherichia coli ECRC101 0.47 MCAODC_09330 yqiB DUF1249 domain-containing protein 0.56 MCAODC_11890 srmB ATP-dependent RNA helicase SrmB low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_00670 hypothetical protein 0.56 OHPLBJKB_01131 ATP-dependent RNA helicase SrmB low > 74
Escherichia coli ECRC62 0.47 BNILDI_00895 yqiB DUF1249 domain-containing protein 0.56 BNILDI_11835 srmB ATP-dependent RNA helicase SrmB low > 75
Escherichia coli ECRC99 0.47 KEDOAH_09330 yqiB DUF1249 domain-containing protein 0.56 KEDOAH_06860 srmB ATP-dependent RNA helicase SrmB — —
Escherichia coli BL21 0.47 ECD_02905 DUF1249 protein YqiB 0.56 ECD_02470 ATP-dependent RNA helicase low > 61
Escherichia coli ECOR38 0.47 HEPCGN_17690 yqiB DUF1249 domain-containing protein 0.56 HEPCGN_20505 srmB ATP-dependent RNA helicase SrmB low > 88
Escherichia fergusonii Becca 0.47 EFB2_00775 hypothetical protein 0.56 EFB2_01320 ATP-dependent RNA helicase SrmB low > 86
Escherichia coli Nissle 1917 0.47 ECOLIN_RS17505 DUF1249 family protein 0.56 ECOLIN_RS14580 ATP-dependent RNA helicase SrmB low > 55
Escherichia coli ECRC98 0.47 JDDGAC_22450 yqiB DUF1249 domain-containing protein 0.56 JDDGAC_25025 srmB ATP-dependent RNA helicase SrmB low > 87
Dickeya dianthicola 67-19 0.47 HGI48_RS01645 DUF1249 family protein 0.56 HGI48_RS15865 ATP-dependent RNA helicase SrmB low > 71
Dickeya dianthicola ME23 0.46 DZA65_RS01720 DUF1249 family protein 0.56 DZA65_RS16945 ATP-dependent RNA helicase SrmB low > 75
Dickeya dadantii 3937 0.45 DDA3937_RS01750 DUF1249 family protein 0.56 DDA3937_RS15780 ATP-dependent RNA helicase SrmB low > 74
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_08790 cytoplasmic protein 0.34 AO356_04210 RNA helicase — —
Alteromonas macleodii MIT1002 0.31 MIT1002_00672 putative dehydrogenase 0.56 MIT1002_00941 ATP-dependent RNA helicase SrmB — —
Shewanella sp. ANA-3 0.26 Shewana3_0727 hypothetical protein (RefSeq) 0.52 Shewana3_3336 ATP-dependent RNA helicase SrmB (RefSeq) low > 73
Shewanella oneidensis MR-1 0.25 SO3902 conserved hypothetical protein (NCBI ptt file) 0.52 SO0947 srmB ATP-dependent RNA helicase SrmB (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.24 Shew_0546 hypothetical protein (RefSeq) 0.52 Shew_0767 ATP-dependent RNA helicase SrmB (RefSeq) low > 60

Not shown: 25 genomes with orthologs for CSW01_12325 only; 3 genomes with orthologs for CSW01_03475 only