Conservation of cofitness between CSW01_02815 and CSW01_03190 in Vibrio cholerae E7946 ATCC 55056

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02815 tRNA pseudouridine(13) synthase TruD 1.0 CSW01_03190 hypothetical protein 0.57 9
Serratia liquefaciens MT49 0.39 IAI46_03765 tRNA pseudouridine(13) synthase TruD 0.29 IAI46_21300 YacL family protein low > 86
Dickeya dadantii 3937 0.38 DDA3937_RS16890 tRNA pseudouridine(13) synthase TruD 0.30 DDA3937_RS17880 YacL family protein low > 74
Dickeya dianthicola 67-19 0.37 HGI48_RS16960 tRNA pseudouridine(13) synthase TruD 0.30 HGI48_RS17820 YacL family protein low > 71
Dickeya dianthicola ME23 0.37 DZA65_RS18035 tRNA pseudouridine(13) synthase TruD 0.30 DZA65_RS18965 YacL family protein 0.38 14
Rahnella sp. WP5 0.37 EX31_RS07845 tRNA pseudouridine(13) synthase TruD 0.32 EX31_RS03395 YacL family protein low > 89
Erwinia amylovora T8 0.37 OLJFJH_09360 tRNA pseudouridine(13) synthase TruD 0.28 OLJFJH_00855 protein YacL low > 58
Escherichia coli ECRC62 0.36 BNILDI_10840 truD tRNA pseudouridine(13) synthase TruD 0.28 BNILDI_08790 yacL protein YacL 0.56 18
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00988 tRNA pseudouridine synthase D 0.28 OHPLBJKB_03542 hypothetical protein low > 73
Escherichia coli BW25113 0.36 b2745 truD tRNA pseudouridine synthase D (NCBI) 0.28 b0119 yacL orf, hypothetical protein (VIMSS) low > 76
Escherichia coli BL21 0.36 ECD_02595 tRNA(Glu) pseudouridine(13) synthase 0.28 ECD_00118 UPF0231 family protein low > 61
Pectobacterium carotovorum WPP14 0.36 HER17_RS04335 tRNA pseudouridine(13) synthase TruD 0.27 HER17_RS03365 protein YacL low > 75
Escherichia coli ECOR27 0.36 NOLOHH_12290 truD tRNA pseudouridine(13) synthase TruD 0.28 NOLOHH_02820 yacL protein YacL low > 75
Escherichia coli ECOR38 0.36 HEPCGN_19655 truD tRNA pseudouridine(13) synthase TruD 0.28 HEPCGN_08455 yacL protein YacL low > 87
Escherichia coli ECRC102 0.36 NIAGMN_18245 truD tRNA pseudouridine(13) synthase TruD 0.28 NIAGMN_08325 yacL protein YacL — —
Escherichia coli ECRC100 0.36 OKFHMN_20475 truD tRNA pseudouridine(13) synthase TruD 0.28 OKFHMN_10475 yacL protein YacL low > 80
Escherichia coli ECRC99 0.36 KEDOAH_07665 truD tRNA pseudouridine(13) synthase TruD 0.28 KEDOAH_17680 yacL protein YacL — —
Escherichia coli ECRC101 0.36 MCAODC_11000 truD tRNA pseudouridine(13) synthase TruD 0.28 MCAODC_00990 yacL protein YacL low > 87
Escherichia coli ECRC98 0.36 JDDGAC_24140 truD tRNA pseudouridine(13) synthase TruD 0.28 JDDGAC_14070 yacL protein YacL low > 86
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2841 tRNA pseudouridine synthase, TruD family 0.28 EX28DRAFT_3716 Uncharacterized protein conserved in bacteria low > 76
Escherichia coli Nissle 1917 0.36 ECOLIN_RS15350 tRNA pseudouridine(13) synthase TruD 0.29 ECOLIN_RS00665 protein YacL low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4793 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.27 GFF113 FIG01045153: hypothetical protein low > 78
Escherichia fergusonii Becca 0.36 EFB2_01165 tRNA pseudouridine synthase D 0.28 EFB2_03926 hypothetical protein low > 86
Klebsiella michiganensis M5al 0.35 BWI76_RS22665 tRNA pseudouridine(13) synthase TruD 0.28 BWI76_RS04915 hypothetical protein low > 92
Pantoea sp. MT58 0.35 IAI47_04215 tRNA pseudouridine(13) synthase TruD 0.28 IAI47_15765 YacL family protein low > 76
Enterobacter sp. TBS_079 0.34 MPMX20_03631 tRNA pseudouridine synthase D 0.28 MPMX20_00813 hypothetical protein low > 85
Shewanella loihica PV-4 0.33 Shew_1209 pseudouridylate synthase (RefSeq) 0.34 Shew_0841 hypothetical protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.31 Shewana3_1120 tRNA pseudouridine synthase D, TruD (RefSeq) 0.37 Shewana3_0655 hypothetical protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.30 Sama_1040 pseudouridylate synthase (RefSeq) 0.37 Sama_0645 hypothetical protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.30 SO3436 conserved hypothetical protein (NCBI ptt file) 0.36 SO3983 conserved hypothetical protein (NCBI ptt file) low > 76

Not shown: 29 genomes with orthologs for CSW01_02815 only; 0 genomes with orthologs for CSW01_03190 only