Conservation of cofitness between CSW01_03750 and CSW01_02100 in Vibrio cholerae E7946 ATCC 55056

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03750 U32 family peptidase 1.0 CSW01_02100 RNase E specificity factor CsrD 0.62 5
Rahnella sp. WP5 0.77 EX31_RS20325 tRNA 5-hydroxyuridine modification protein YegQ 0.26 EX31_RS12230 RNase E specificity factor CsrD low > 89
Serratia liquefaciens MT49 0.76 IAI46_19015 tRNA 5-hydroxyuridine modification protein YegQ 0.29 IAI46_22725 RNase E specificity factor CsrD low > 86
Klebsiella michiganensis M5al 0.76 BWI76_RS19280 U32 family peptidase 0.24 BWI76_RS25505 RNase E specificity factor CsrD low > 92
Escherichia coli BL21 0.75 ECD_01986 putative peptidase 0.25 ECD_03111 targeting factor for csrBC sRNA degradation low > 61
Escherichia coli ECRC62 0.75 BNILDI_14415 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.25 BNILDI_02015 csrD RNase E specificity factor CsrD low > 75
Escherichia coli ECRC101 0.75 MCAODC_20775 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.25 MCAODC_08240 csrD RNase E specificity factor CsrD low > 87
Escherichia coli Nissle 1917 0.75 ECOLIN_RS12250 tRNA 5-hydroxyuridine modification protein YegQ 0.25 ECOLIN_RS18635 RNase E specificity factor CsrD low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_01623 putative protease YdcP 0.25 OHPLBJKB_00453 RNase E specificity factor CsrD low > 73
Escherichia coli BW25113 0.75 b2081 yegQ predicted peptidase (NCBI) 0.25 b3252 yhdA conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECRC102 0.75 NIAGMN_22110 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.25 NIAGMN_15480 csrD RNase E specificity factor CsrD — —
Escherichia fergusonii Becca 0.75 EFB2_01770 23S rRNA 5-hydroxycytidine synthase 0.25 EFB2_00579 RNase E specificity factor CsrD low > 86
Escherichia coli ECOR38 0.75 HEPCGN_02845 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.25 HEPCGN_16585 csrD RNase E specificity factor CsrD low > 87
Escherichia coli ECRC98 0.75 JDDGAC_28275 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.25 JDDGAC_21345 csrD RNase E specificity factor CsrD low > 86
Escherichia coli ECRC99 0.75 KEDOAH_03985 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.25 KEDOAH_10430 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC100 0.75 OKFHMN_24165 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.25 OKFHMN_17720 csrD RNase E specificity factor CsrD low > 80
Escherichia coli ECOR27 0.75 NOLOHH_15500 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.25 NOLOHH_09505 csrD RNase E specificity factor CsrD low > 75
Pectobacterium carotovorum WPP14 0.75 HER17_RS06280 tRNA 5-hydroxyuridine modification protein YegQ 0.25 HER17_RS20175 RNase E specificity factor CsrD low > 75
Enterobacter asburiae PDN3 0.74 EX28DRAFT_0478 Collagenase and related proteases 0.26 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain low > 76
Enterobacter sp. TBS_079 0.74 MPMX20_03067 23S rRNA 5-hydroxycytidine synthase 0.25 MPMX20_04158 RNase E specificity factor CsrD low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF3846 Putative protease 0.24 GFF2133 RNase E specificity factor CsrD low > 78
Shewanella oneidensis MR-1 0.73 SO1252 peptidase, U32 family (NCBI ptt file) 0.22 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) low > 76
Dickeya dadantii 3937 0.73 DDA3937_RS15295 tRNA 5-hydroxyuridine modification protein YegQ 0.25 DDA3937_RS01425 RNase E specificity factor CsrD low > 74
Pantoea sp. MT58 0.73 IAI47_06845 tRNA 5-hydroxyuridine modification protein YegQ 0.22 IAI47_02430 RNase E specificity factor CsrD low > 76
Shewanella sp. ANA-3 0.72 Shewana3_1068 peptidase U32 (RefSeq) 0.21 Shewana3_3668 regulatory protein CsrD (RefSeq) low > 73
Dickeya dianthicola 67-19 0.71 HGI48_RS15375 tRNA 5-hydroxyuridine modification protein YegQ 0.26 HGI48_RS01345 RNase E specificity factor CsrD low > 71
Dickeya dianthicola ME23 0.71 DZA65_RS16195 tRNA 5-hydroxyuridine modification protein YegQ 0.26 DZA65_RS01405 RNase E specificity factor CsrD low > 75
Shewanella amazonensis SB2B 0.71 Sama_1004 U32 family peptidase (RefSeq) 0.21 Sama_0449 regulatory protein CsrD (RefSeq) low > 62
Shewanella loihica PV-4 0.71 Shew_2783 peptidase U32 (RefSeq) 0.19 Shew_0384 regulatory protein CsrD (RefSeq) low > 60
Erwinia tracheiphila SCR3 0.70 LU632_RS08665 yegQ tRNA 5-hydroxyuridine modification protein YegQ 0.24 LU632_RS21455 csrD RNase E specificity factor CsrD low > 74

Not shown: 26 genomes with orthologs for CSW01_03750 only; 1 genomes with orthologs for CSW01_02100 only