Conservation of cofitness between CSW01_02060 and CSW01_02100 in Vibrio cholerae E7946 ATCC 55056

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02060 methionine synthase 1.0 CSW01_02100 RNase E specificity factor CsrD 0.71 13
Klebsiella michiganensis M5al 0.76 BWI76_RS01685 methionine synthase 0.24 BWI76_RS25505 RNase E specificity factor CsrD low > 92
Klebsiella pneumoniae MKP103 0.76 KDGMDA_10165 methionine synthase 0.23 KDGMDA_06280 Lipoprotein low > 95
Pectobacterium carotovorum WPP14 0.76 HER17_RS02310 methionine synthase 0.25 HER17_RS20175 RNase E specificity factor CsrD low > 75
Pantoea agglomerans CFBP13505 P0401 0.76 PagCFBP13505_RS22305 methionine synthase 0.22 PagCFBP13505_RS11025 RNase E specificity factor CsrD low > 74
Escherichia coli BL21 0.76 ECD_03891 homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent 0.25 ECD_03111 targeting factor for csrBC sRNA degradation low > 61
Escherichia coli BW25113 0.76 b4019 metH B12-dependent methionine synthase (NCBI) 0.25 b3252 yhdA conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECOR27 0.76 NOLOHH_05380 metH methionine synthase 0.25 NOLOHH_09505 csrD RNase E specificity factor CsrD low > 76
Escherichia coli ECRC62 0.76 BNILDI_06140 metH methionine synthase 0.25 BNILDI_02015 csrD RNase E specificity factor CsrD low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.76 OHPLBJKB_04030 Methionine synthase 0.25 OHPLBJKB_00453 RNase E specificity factor CsrD low > 74
Dickeya dadantii 3937 0.76 DDA3937_RS19040 methionine synthase 0.25 DDA3937_RS01425 RNase E specificity factor CsrD low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.76 GFF1358 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) 0.24 GFF2133 RNase E specificity factor CsrD low > 78
Escherichia coli ECRC101 0.76 MCAODC_03740 metH methionine synthase 0.25 MCAODC_08240 csrD RNase E specificity factor CsrD low > 87
Escherichia coli ECOR38 0.76 HEPCGN_11885 metH methionine synthase 0.25 HEPCGN_16585 csrD RNase E specificity factor CsrD low > 88
Escherichia coli ECRC102 0.76 NIAGMN_10990 metH methionine synthase 0.25 NIAGMN_15480 csrD RNase E specificity factor CsrD low > 80
Escherichia coli ECRC100 0.76 OKFHMN_13240 metH methionine synthase 0.25 OKFHMN_17720 csrD RNase E specificity factor CsrD low > 79
Escherichia coli ECRC99 0.76 KEDOAH_14920 metH methionine synthase 0.25 KEDOAH_10430 csrD RNase E specificity factor CsrD — —
Enterobacter asburiae PDN3 0.76 EX28DRAFT_4326 methionine synthase (B12-dependent) (EC 2.1.1.13) 0.26 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain low > 76
Escherichia coli ECRC98 0.75 JDDGAC_16865 metH methionine synthase 0.25 JDDGAC_21345 csrD RNase E specificity factor CsrD low > 87
Serratia liquefaciens MT49 0.75 IAI46_23155 methionine synthase 0.29 IAI46_22725 RNase E specificity factor CsrD low > 87
Escherichia fergusonii Becca 0.75 EFB2_04592 Methionine synthase 0.25 EFB2_00579 RNase E specificity factor CsrD low > 86
Escherichia coli Nissle 1917 0.75 ECOLIN_RS23160 methionine synthase 0.25 ECOLIN_RS18635 RNase E specificity factor CsrD low > 55
Pantoea sp. MT58 0.75 IAI47_17990 methionine synthase 0.22 IAI47_02430 RNase E specificity factor CsrD low > 76
Rahnella sp. WP5 0.75 EX31_RS11760 methionine synthase 0.26 EX31_RS12230 RNase E specificity factor CsrD low > 89
Dickeya dianthicola ME23 0.75 DZA65_RS20250 methionine synthase 0.26 DZA65_RS01405 RNase E specificity factor CsrD low > 75
Enterobacter sp. TBS_079 0.75 MPMX20_00235 Methionine synthase 0.25 MPMX20_04158 RNase E specificity factor CsrD low > 85
Dickeya dianthicola 67-19 0.75 HGI48_RS19130 methionine synthase 0.26 HGI48_RS01345 RNase E specificity factor CsrD low > 71
Shewanella amazonensis SB2B 0.67 Sama_0758 metH B12-dependent methionine synthase (RefSeq) 0.21 Sama_0449 regulatory protein CsrD (RefSeq) low > 62
Shewanella sp. ANA-3 0.66 Shewana3_3282 metH B12-dependent methionine synthase (RefSeq) 0.21 Shewana3_3668 regulatory protein CsrD (RefSeq) low > 73
Shewanella oneidensis MR-1 0.66 SO1030 metH 5-methyltetrahydrofolate--homocysteine methyltransferase (NCBI ptt file) 0.22 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.65 Shew_0710 metH B12-dependent methionine synthase (RefSeq) 0.19 Shew_0384 regulatory protein CsrD (RefSeq) low > 60

Not shown: 46 genomes with orthologs for CSW01_02060 only; 3 genomes with orthologs for CSW01_02100 only