Conservation of cofitness between CSW01_02100 and CSW01_01555 in Vibrio cholerae E7946 ATCC 55056

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02100 RNase E specificity factor CsrD 1.0 CSW01_01555 ATP-dependent RNA helicase RhlB 0.78 8
Serratia liquefaciens MT49 0.29 IAI46_22725 RNase E specificity factor CsrD 0.71 IAI46_00575 ATP-dependent RNA helicase RhlB low > 86
Dickeya dianthicola ME23 0.26 DZA65_RS01405 RNase E specificity factor CsrD 0.70 DZA65_RS21270 ATP-dependent RNA helicase RhlB low > 75
Dickeya dianthicola 67-19 0.26 HGI48_RS01345 RNase E specificity factor CsrD 0.70 HGI48_RS20225 ATP-dependent RNA helicase RhlB low > 71
Rahnella sp. WP5 0.26 EX31_RS12230 RNase E specificity factor CsrD 0.71 EX31_RS15040 ATP-dependent RNA helicase RhlB low > 89
Enterobacter asburiae PDN3 0.26 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain 0.72 EX28DRAFT_4451 Superfamily II DNA and RNA helicases low > 76
Dickeya dadantii 3937 0.25 DDA3937_RS01425 RNase E specificity factor CsrD 0.70 DDA3937_RS20080 ATP-dependent RNA helicase RhlB low > 74
Escherichia coli ECOR38 0.25 HEPCGN_16585 csrD RNase E specificity factor CsrD 0.72 HEPCGN_13310 rhlB ATP-dependent RNA helicase RhlB low > 87
Escherichia coli ECOR27 0.25 NOLOHH_09505 csrD RNase E specificity factor CsrD 0.72 NOLOHH_06735 rhlB ATP-dependent RNA helicase RhlB low > 75
Escherichia coli ECRC100 0.25 OKFHMN_17720 csrD RNase E specificity factor CsrD 0.72 OKFHMN_14600 rhlB ATP-dependent RNA helicase RhlB low > 80
Escherichia coli ECRC62 0.25 BNILDI_02015 csrD RNase E specificity factor CsrD 0.72 BNILDI_04790 rhlB ATP-dependent RNA helicase RhlB 0.74 39
Escherichia coli Nissle 1917 0.25 ECOLIN_RS18635 RNase E specificity factor CsrD 0.72 ECOLIN_RS21700 ATP-dependent RNA helicase RhlB low > 55
Escherichia coli ECRC101 0.25 MCAODC_08240 csrD RNase E specificity factor CsrD 0.72 MCAODC_05105 rhlB ATP-dependent RNA helicase RhlB low > 87
Escherichia coli ECRC102 0.25 NIAGMN_15480 csrD RNase E specificity factor CsrD 0.72 NIAGMN_12355 rhlB ATP-dependent RNA helicase RhlB — —
Escherichia coli ECRC98 0.25 JDDGAC_21345 csrD RNase E specificity factor CsrD 0.72 JDDGAC_18220 rhlB ATP-dependent RNA helicase RhlB low > 86
Escherichia coli ECRC99 0.25 KEDOAH_10430 csrD RNase E specificity factor CsrD 0.72 KEDOAH_13550 rhlB ATP-dependent RNA helicase RhlB — —
Escherichia coli BL21 0.25 ECD_03111 targeting factor for csrBC sRNA degradation 0.72 ECD_03658 ATP-dependent RNA helicase low > 61
Escherichia fergusonii Becca 0.25 EFB2_00579 RNase E specificity factor CsrD 0.72 EFB2_04858 ATP-dependent RNA helicase RhlB low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.25 OHPLBJKB_00453 RNase E specificity factor CsrD 0.72 OHPLBJKB_04274 ATP-dependent RNA helicase RhlB low > 73
Escherichia coli BW25113 0.25 b3252 yhdA conserved inner membrane protein (NCBI) 0.72 b3780 rhlB ATP-dependent RNA helicase (NCBI) low > 76
Enterobacter sp. TBS_079 0.25 MPMX20_04158 RNase E specificity factor CsrD 0.71 MPMX20_04492 ATP-dependent RNA helicase RhlB low > 85
Pectobacterium carotovorum WPP14 0.25 HER17_RS20175 RNase E specificity factor CsrD 0.71 HER17_RS01130 ATP-dependent RNA helicase RhlB low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF2133 RNase E specificity factor CsrD 0.72 GFF2892 ATP-dependent RNA helicase RhlB 0.97 4
Klebsiella michiganensis M5al 0.24 BWI76_RS25505 RNase E specificity factor CsrD 0.71 BWI76_RS01065 ATP-dependent RNA helicase RhlB low > 92
Erwinia tracheiphila SCR3 0.24 LU632_RS21455 csrD RNase E specificity factor CsrD 0.71 LU632_RS24265 rhlB ATP-dependent RNA helicase RhlB low > 74
Erwinia amylovora T8 0.22 OLJFJH_06905 RNase E specificity factor CsrD 0.71 OLJFJH_06265 ATP-dependent RNA helicase RhlB 0.69 44
Shewanella oneidensis MR-1 0.22 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) 0.66 SO0407 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) low > 76
Pantoea sp. MT58 0.22 IAI47_02430 RNase E specificity factor CsrD 0.73 IAI47_18535 ATP-dependent RNA helicase RhlB low > 76
Shewanella sp. ANA-3 0.21 Shewana3_3668 regulatory protein CsrD (RefSeq) 0.65 Shewana3_0410 ATP-dependent RNA helicase RhlB (RefSeq) low > 73
Shewanella amazonensis SB2B 0.21 Sama_0449 regulatory protein CsrD (RefSeq) 0.64 Sama_3215 ATP-dependent RNA helicase RhlB (RefSeq) low > 62
Shewanella loihica PV-4 0.19 Shew_0384 regulatory protein CsrD (RefSeq) 0.67 Shew_0339 ATP-dependent RNA helicase RhlB (RefSeq) low > 60

Not shown: 0 genomes with orthologs for CSW01_02100 only; 9 genomes with orthologs for CSW01_01555 only