Conservation of cofitness between BWI76_RS18000 and BWI76_RS21350 in Klebsiella michiganensis M5al

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Klebsiella michiganensis M5al 1.0 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.0 BWI76_RS21350 anti-RNA polymerase sigma factor SigE 0.52 1
Escherichia coli ECOR38 0.78 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.76 HEPCGN_20525 rseA anti-sigma-E factor RseA low > 87
Escherichia coli ECRC101 0.78 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 MCAODC_11910 rseA anti-sigma-E factor RseA 0.47 71
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F 0.76 OHPLBJKB_01135 Anti-sigma-E factor RseA low > 73
Escherichia coli ECRC98 0.78 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 JDDGAC_25045 rseA anti-sigma-E factor RseA low > 86
Escherichia coli ECRC102 0.78 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 NIAGMN_19150 rseA anti-sigma-E factor RseA — —
Escherichia coli ECRC100 0.78 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 OKFHMN_21380 rseA anti-sigma-E factor RseA — —
Escherichia coli ECRC99 0.78 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 KEDOAH_06840 rseA anti-sigma-E factor RseA — —
Escherichia coli ECOR27 0.78 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.77 NOLOHH_13055 rseA anti-sigma-E factor RseA — —
Escherichia fergusonii Becca 0.78 EFB2_02166 Ribosomal RNA small subunit methyltransferase F 0.77 EFB2_01324 Anti-sigma-E factor RseA low > 86
Escherichia coli BL21 0.78 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent 0.77 ECD_02466 anti-sigma factor — —
Escherichia coli ECRC62 0.77 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.77 BNILDI_11855 rseA anti-sigma-E factor RseA low > 75
Enterobacter asburiae PDN3 0.77 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase 0.79 EX28DRAFT_0073 Negative regulator of sigma E activity low > 76
Escherichia coli BW25113 0.77 b1835 yebU putative nucleolar proteins (VIMSS) 0.77 b2572 rseA anti-sigma factor (NCBI) low > 76
Escherichia coli Nissle 1917 0.77 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.77 ECOLIN_RS14555 anti-sigma-E factor RseA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.76 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) 0.76 GFF2108 Sigma factor RpoE negative regulatory protein RseA — —
Enterobacter sp. TBS_079 0.76 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F 0.79 MPMX20_03443 Anti-sigma-E factor RseA low > 85
Serratia liquefaciens MT49 0.68 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.62 IAI46_19580 anti-sigma-E factor RseA low > 86
Pantoea sp. MT58 0.68 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.70 IAI47_04855 anti-sigma-E factor RseA low > 76
Rahnella sp. WP5 0.65 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.68 EX31_RS21805 anti-sigma-E factor RseA low > 89
Pectobacterium carotovorum WPP14 0.64 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.58 HER17_RS05785 anti-sigma-E factor RseA — —
Dickeya dadantii 3937 0.63 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.54 DDA3937_RS15760 anti-sigma-E factor RseA — —
Dickeya dianthicola 67-19 0.62 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.53 HGI48_RS15845 anti-sigma-E factor RseA — —
Dickeya dianthicola ME23 0.62 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.52 DZA65_RS16925 anti-sigma-E factor RseA low > 75
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.35 CSW01_12480 sigma-E factor negative regulatory protein RseA low > 62
Shewanella loihica PV-4 0.49 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.24 Shew_1049 anti sigma-E protein, RseA (RefSeq) — —
Shewanella amazonensis SB2B 0.48 Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.23 Sama_0875 sigma-E factor negative regulatory protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.47 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.25 Shewana3_3031 anti sigma-E protein, RseA (RefSeq) — —
Shewanella oneidensis MR-1 0.47 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) 0.26 SO1343 rseA sigma-E factor negative regulatory protein (NCBI ptt file) low > 76

Not shown: 10 genomes with orthologs for BWI76_RS18000 only; 2 genomes with orthologs for BWI76_RS21350 only