Conservation of cofitness between BNILDI_11875 and BNILDI_22580 in Escherichia coli ECRC62

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC62 1.0 BNILDI_11875 lepA translation elongation factor 4 1.0 BNILDI_22580 pdeB cyclic-guanylate-specific phosphodiesterase PdeB 0.56 16
Escherichia coli ECOR38 1.00 HEPCGN_20545 lepA translation elongation factor 4 0.99 HEPCGN_06845 pdeB cyclic-guanylate-specific phosphodiesterase PdeB low > 87
Escherichia coli Nissle 1917 1.00 ECOLIN_RS14540 translation elongation factor 4 0.99 ECOLIN_RS02725 cyclic-guanylate-specific phosphodiesterase PdeB low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01138 Elongation factor 4 0.99 OHPLBJKB_03217 putative cyclic di-GMP phosphodiesterase PdeB low > 73
Escherichia coli BW25113 1.00 b2569 lepA GTP-binding protein LepA (NCBI) 0.99 b0457 ylaB orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECRC101 1.00 MCAODC_11930 lepA translation elongation factor 4 1.00 MCAODC_27455 pdeB cyclic-guanylate-specific phosphodiesterase PdeB low > 87
Escherichia coli ECRC98 1.00 JDDGAC_25065 lepA translation elongation factor 4 1.00 JDDGAC_11885 pdeB cyclic-guanylate-specific phosphodiesterase PdeB low > 86
Escherichia coli ECRC102 1.00 NIAGMN_19170 lepA translation elongation factor 4 1.00 NIAGMN_06285 pdeB cyclic-guanylate-specific phosphodiesterase PdeB — —
Escherichia coli ECRC99 1.00 KEDOAH_06820 lepA translation elongation factor 4 1.00 KEDOAH_19735 pdeB cyclic-guanylate-specific phosphodiesterase PdeB — —
Escherichia coli ECOR27 1.00 NOLOHH_13075 lepA translation elongation factor 4 1.00 NOLOHH_01165 pdeB cyclic-guanylate-specific phosphodiesterase PdeB low > 75
Escherichia coli ECRC100 1.00 OKFHMN_21400 lepA translation elongation factor 4 1.00 OKFHMN_08230 pdeB cyclic-guanylate-specific phosphodiesterase PdeB 0.70 65
Escherichia coli BL21 1.00 ECD_02463 back-translocating elongation factor EF4, GTPase 1.00 ECD_00408 putative membrane-anchored cyclic-di-GMP phosphodiesterase low > 61
Escherichia fergusonii Becca 1.00 EFB2_01327 Elongation factor 4 0.99 EFB2_03601 putative cyclic di-GMP phosphodiesterase PdeB low > 86
Klebsiella michiganensis M5al 0.94 BWI76_RS21335 elongation factor 4 0.50 BWI76_RS06685 cyclic diguanylate phosphodiesterase (EAL) domain-containing protein — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF2477 Translation elongation factor LepA 0.69 GFF4372 Uncharacterized protein ylaB low > 78
Enterobacter asburiae PDN3 0.94 EX28DRAFT_0076 elongation factor 4 0.62 EX28DRAFT_2505 Predicted signal transduction protein containing sensor and EAL domains low > 76
Enterobacter sp. TBS_079 0.93 MPMX20_03440 Elongation factor 4 0.61 MPMX20_01055 putative cyclic di-GMP phosphodiesterase PdeB low > 85
Pectobacterium carotovorum WPP14 0.92 HER17_RS05805 translation elongation factor 4 0.28 HER17_RS16195 EAL domain-containing protein low > 75
Pseudomonas sp. S08-1 0.76 OH686_20065 elongation factor 4 0.23 OH686_12165 Rtn protein low > 80
Pseudomonas sp. RS175 0.76 PFR28_03525 Elongation factor 4 0.23 PFR28_04632 putative cyclic di-GMP phosphodiesterase PdeB — —
Pseudomonas putida KT2440 0.76 PP_1431 Elongation factor 4 0.22 PP_0131 putative membrane-anchored phosphodiesterase — —
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_4842 Translation elongation factor LepA 0.24 PfGW456L13_586 Rtn protein low > 87
Pseudomonas fluorescens FW300-N2E2 0.75 Pf6N2E2_5423 Translation elongation factor LepA 0.23 Pf6N2E2_4154 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) — —
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_17485 elongation factor 4 0.23 AO356_11425 diguanylate phosphodiesterase low > 104
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_04520 elongation factor 4 0.23 AO353_10970 diguanylate phosphodiesterase low > 101
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_895 Translation elongation factor LepA 0.24 Pf1N1B4_1883 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) — —
Herbaspirillum seropedicae SmR1 0.73 HSERO_RS09650 elongation factor 4 0.24 HSERO_RS18635 signal transduction protein low > 78
Xanthomonas campestris pv. campestris strain 8004 0.69 Xcc-8004.3676.1 Translation elongation factor LepA 0.23 Xcc-8004.4919.1 FIG01210508: hypothetical protein low > 74
Acidovorax sp. GW101-3H11 0.68 Ac3H11_1569 Translation elongation factor LepA 0.21 Ac3H11_392 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) low > 79
Rhizobium sp. OAE497 0.60 ABIE40_RS01055 translation elongation factor 4 0.24 ABIE40_RS05110 EAL domain-containing protein low > 107
Bosea sp. OAE506 0.59 ABIE41_RS03260 translation elongation factor 4 0.16 ABIE41_RS16245 EAL domain-containing protein low > 77

Not shown: 71 genomes with orthologs for BNILDI_11875 only; 0 genomes with orthologs for BNILDI_22580 only