Conservation of cofitness between Atu3296 and Atu4505 in Agrobacterium fabrum C58

22 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu3296 two component response regulator for C4-dicarboxylate transport 1.0 Atu4505 LacI family transcriptional regulator 0.37 6
Sinorhizobium meliloti 1021 0.70 SM_b20613 C4-dicarboxylate transport transcriptional regulator 0.89 SMc02975 phosphoenolpyruvate carboxykinase regulator transcription regulator protein low > 103
Rhizobium sp. OAE497 0.67 ABIE40_RS26335 sigma-54 dependent transcriptional regulator 0.92 ABIE40_RS16645 LacI family DNA-binding transcriptional regulator 0.43 24
Xanthobacter sp. DMC5 0.61 GFF3675 C4-dicarboxylate transport transcriptional regulatory protein DctD 0.38 GFF2067 HTH-type transcriptional regulator DegA — —
Azospirillum sp. SherDot2 0.55 MPMX19_04251 C4-dicarboxylate transport transcriptional regulatory protein DctD 0.32 MPMX19_05875 Catabolite control protein A low > 112
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_03805 C4-dicarboxylate ABC transporter 0.26 AO353_20830 LacI family transcriptional regulator low > 101
Pseudomonas lactucae CFBP13502 0.49 GEMAOFIL_04682 C4-dicarboxylate transport transcriptional regulatory protein DctD 0.25 GEMAOFIL_03908 HTH-type transcriptional repressor PurR low > 96
Pseudomonas fluorescens FW300-N1B4 0.49 Pf1N1B4_685 Nitrogen regulation protein NR(I) 0.25 Pf1N1B4_6032 Ribose operon repressor — —
Pseudomonas fluorescens GW456-L13 0.49 PfGW456L13_1806 Nitrogen regulation protein NR(I) 0.26 PfGW456L13_3909 Ribose operon repressor low > 87
Pseudomonas sp. DMC3 0.49 GFF5041 C4-dicarboxylate transport transcriptional regulatory protein DctD 0.26 GFF900 HTH-type transcriptional repressor PurR low > 89
Pseudomonas simiae WCS417 0.48 PS417_22645 C4-dicarboxylate ABC transporter 0.26 PS417_18390 LacI family transcriptional regulator low > 88
Pseudomonas orientalis W4I3 0.48 QF045_RS24815 sigma-54 dependent transcriptional regulator 0.25 QF045_RS20540 LacI family DNA-binding transcriptional regulator low > 93
Escherichia coli Nissle 1917 0.48 ECOLIN_RS23460 sigma-54 dependent transcriptional regulator 0.29 ECOLIN_RS23390 LacI family DNA-binding transcriptional regulator low > 55
Escherichia fergusonii Becca 0.48 EFB2_04538 C4-dicarboxylate transport transcriptional regulatory protein DctD 0.29 EFB2_04549 HTH-type transcriptional repressor CytR low > 86
Pseudomonas fluorescens SBW25 0.48 PFLU_RS24280 sigma-54-dependent Fis family transcriptional regulator 0.25 PFLU_RS20365 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.48 PFLU_RS24280 sigma-54-dependent Fis family transcriptional regulator 0.25 PFLU_RS20365 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas sp. RS175 0.48 PFR28_03462 C4-dicarboxylate transport transcriptional regulatory protein DctD 0.26 PFR28_02734 Ribose operon repressor low > 88
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_5487 Nitrogen regulation protein NR(I) 0.26 Pf6N2E2_164 Ribose operon repressor low > 103
Shewanella amazonensis SB2B 0.46 Sama_2213 response regulator receiver protein (RefSeq) 0.24 Sama_0565 LacI family transcription regulator (RefSeq) low > 62
Serratia liquefaciens MT49 0.34 IAI46_19460 two-component system response regulator GlrR 0.31 IAI46_22025 LacI family DNA-binding transcriptional regulator low > 87
Enterobacter sp. TBS_079 0.33 MPMX20_03423 Transcriptional regulatory protein QseF 0.31 MPMX20_00737 Maltose regulon regulatory protein MalI low > 85
Bacteroides thetaiotaomicron VPI-5482 0.32 BT1469 two-component system response regulator (NCBI ptt file) 0.21 BT3613 LacI family transcriptional regulator (NCBI ptt file) low > 81
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS04010 sigma-54 dependent transcriptional regulator 0.33 ABZR86_RS11095 LacI family DNA-binding transcriptional regulator low > 74

Not shown: 67 genomes with orthologs for Atu3296 only; 6 genomes with orthologs for Atu4505 only