Conservation of cofitness between Shew_2455 and Shew_2934 in Shewanella loihica PV-4

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_2455 peptidase M23B (RefSeq) 1.0 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.48 11
Shewanella sp. ANA-3 0.68 Shewana3_2610 peptidase M23B (RefSeq) 0.93 Shewana3_0996 rRNA large subunit methyltransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.68 SO2842 peptidase, M23/M37 family (NCBI ptt file) 0.93 SO1169 conserved hypothetical protein TIGR00246 (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.66 Sama_1269 M24/M37 family peptidase (RefSeq) 0.94 Sama_2587 rRNA large subunit methyltransferase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_14420 peptidase M23 0.81 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 62
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS02350 murein DD-endopeptidase MepM 0.81 PagCFBP13505_RS03285 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 74
Pantoea sp. MT58 0.30 IAI47_08470 murein DD-endopeptidase MepM 0.82 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 76
Rahnella sp. WP5 0.29 EX31_RS10670 murein DD-endopeptidase MepM 0.80 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 89
Serratia liquefaciens MT49 0.28 IAI46_14600 murein DD-endopeptidase MepM 0.80 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 86
Erwinia amylovora T8 0.28 OLJFJH_12880 murein DD-endopeptidase MepM 0.80 OLJFJH_17220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 58
Pectobacterium carotovorum WPP14 0.28 HER17_RS11800 murein DD-endopeptidase MepM 0.81 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 75
Escherichia coli ECOR38 0.27 HEPCGN_04715 mepM murein DD-endopeptidase MepM 0.81 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 88
Escherichia coli ECRC100 0.27 OKFHMN_26310 mepM murein DD-endopeptidase MepM 0.81 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 79
Escherichia coli ECRC62 0.27 BNILDI_15540 mepM murein DD-endopeptidase MepM 0.81 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Escherichia coli ECRC102 0.27 NIAGMN_01750 mepM murein DD-endopeptidase MepM 0.81 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Escherichia fergusonii Becca 0.27 EFB2_02086 Murein DD-endopeptidase MepM 0.81 EFB2_03456 Ribosomal RNA large subunit methyltransferase H low > 86
Escherichia coli BW25113 0.27 b1856 yebA orf, hypothetical protein (VIMSS) 0.81 b0636 ybeA hypothetical protein (NCBI) low > 76
Escherichia coli BL21 0.27 ECD_01827 murein DD-endopeptidase, space-maker hydrolase, septation protein 0.81 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_01872 Murein DD-endopeptidase MepM 0.81 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H — —
Escherichia coli ECRC98 0.27 JDDGAC_00885 mepM murein DD-endopeptidase MepM 0.81 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Escherichia coli ECRC101 0.27 MCAODC_19095 mepM murein DD-endopeptidase MepM 0.81 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Escherichia coli ECOR27 0.27 NOLOHH_16750 mepM murein DD-endopeptidase MepM 0.81 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 76
Escherichia coli Nissle 1917 0.27 ECOLIN_RS10340 murein DD-endopeptidase MepM 0.81 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Escherichia coli ECRC99 0.27 KEDOAH_01795 mepM murein DD-endopeptidase MepM 0.81 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH — —
Enterobacter asburiae PDN3 0.26 EX28DRAFT_0700 Membrane proteins related to metalloendopeptidases 0.79 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH — —
Enterobacter sp. TBS_079 0.26 MPMX20_02761 Murein DD-endopeptidase MepM 0.79 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF1635 Cell wall endopeptidase, family M23/M37 0.80 GFF4549 LSU m3Psi1915 methyltransferase RlmH low > 78
Klebsiella pneumoniae MKP103 0.26 KDGMDA_25390 murein DD-endopeptidase MepM 0.79 KDGMDA_16400 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 95
Klebsiella michiganensis M5al 0.26 BWI76_RS18125 murein DD-endopeptidase MepM 0.79 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH low > 92

Not shown: 0 genomes with orthologs for Shew_2455 only; 80 genomes with orthologs for Shew_2934 only