Conservation of cofitness between Shew_2455 and Shew_1020 in Shewanella loihica PV-4

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_2455 peptidase M23B (RefSeq) 1.0 Shew_1020 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) 0.48 9
Shewanella sp. ANA-3 0.68 Shewana3_2610 peptidase M23B (RefSeq) 0.76 Shewana3_3060 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) — —
Shewanella oneidensis MR-1 0.68 SO2842 peptidase, M23/M37 family (NCBI ptt file) 0.78 SO1313 conserved hypothetical protein (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.66 Sama_1269 M24/M37 family peptidase (RefSeq) 0.74 Sama_0848 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_14420 peptidase M23 0.45 CSW01_03615 anhydro-N-acetylmuramic acid kinase low > 62
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS02350 murein DD-endopeptidase MepM 0.46 PagCFBP13505_RS05425 anhydro-N-acetylmuramic acid kinase low > 74
Pantoea sp. MT58 0.30 IAI47_08470 murein DD-endopeptidase MepM 0.45 IAI47_10710 anhydro-N-acetylmuramic acid kinase low > 76
Rahnella sp. WP5 0.29 EX31_RS10670 murein DD-endopeptidase MepM 0.46 EX31_RS13765 anhydro-N-acetylmuramic acid kinase low > 89
Serratia liquefaciens MT49 0.28 IAI46_14600 murein DD-endopeptidase MepM 0.46 IAI46_11350 anhydro-N-acetylmuramic acid kinase low > 86
Erwinia amylovora T8 0.28 OLJFJH_12880 murein DD-endopeptidase MepM 0.44 OLJFJH_14440 anhydro-N-acetylmuramic acid kinase low > 58
Pectobacterium carotovorum WPP14 0.28 HER17_RS11800 murein DD-endopeptidase MepM 0.46 HER17_RS09280 anhydro-N-acetylmuramic acid kinase low > 75
Escherichia coli ECRC62 0.27 BNILDI_15540 mepM murein DD-endopeptidase MepM 0.44 BNILDI_16795 anmK anhydro-N-acetylmuramic acid kinase low > 75
Escherichia coli ECRC102 0.27 NIAGMN_01750 mepM murein DD-endopeptidase MepM 0.44 NIAGMN_00580 anmK anhydro-N-acetylmuramic acid kinase low > 80
Escherichia coli ECOR27 0.27 NOLOHH_16750 mepM murein DD-endopeptidase MepM 0.44 NOLOHH_18005 anmK anhydro-N-acetylmuramic acid kinase low > 76
Escherichia fergusonii Becca 0.27 EFB2_02086 Murein DD-endopeptidase MepM 0.44 EFB2_02352 Anhydro-N-acetylmuramic acid kinase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_01872 Murein DD-endopeptidase MepM 0.44 OHPLBJKB_02085 Anhydro-N-acetylmuramic acid kinase low > 74
Escherichia coli ECRC98 0.27 JDDGAC_00885 mepM murein DD-endopeptidase MepM 0.44 JDDGAC_02075 anmK anhydro-N-acetylmuramic acid kinase low > 87
Escherichia coli ECOR38 0.27 HEPCGN_04715 mepM murein DD-endopeptidase MepM 0.44 HEPCGN_05870 anmK anhydro-N-acetylmuramic acid kinase low > 88
Escherichia coli ECRC101 0.27 MCAODC_19095 mepM murein DD-endopeptidase MepM 0.44 MCAODC_17925 anmK anhydro-N-acetylmuramic acid kinase low > 88
Escherichia coli BW25113 0.27 b1856 yebA orf, hypothetical protein (VIMSS) 0.44 b1640 ydhH anhydro-N-acetylmuramic acid kinase (NCBI) low > 76
Escherichia coli ECRC100 0.27 OKFHMN_26310 mepM murein DD-endopeptidase MepM 0.44 OKFHMN_27485 anmK anhydro-N-acetylmuramic acid kinase low > 79
Escherichia coli ECRC99 0.27 KEDOAH_01795 mepM murein DD-endopeptidase MepM 0.44 KEDOAH_00620 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli BL21 0.27 ECD_01827 murein DD-endopeptidase, space-maker hydrolase, septation protein 0.44 ECD_01610 anhydro-N-acetylmuramic acid kinase low > 61
Escherichia coli Nissle 1917 0.27 ECOLIN_RS10340 murein DD-endopeptidase MepM 0.44 ECOLIN_RS09150 anhydro-N-acetylmuramic acid kinase — —
Enterobacter asburiae PDN3 0.26 EX28DRAFT_0700 Membrane proteins related to metalloendopeptidases 0.46 EX28DRAFT_1636 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 76
Enterobacter sp. TBS_079 0.26 MPMX20_02761 Murein DD-endopeptidase MepM 0.46 MPMX20_01998 Anhydro-N-acetylmuramic acid kinase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF1635 Cell wall endopeptidase, family M23/M37 0.46 GFF3634 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 78
Klebsiella pneumoniae MKP103 0.26 KDGMDA_25390 murein DD-endopeptidase MepM 0.45 KDGMDA_23365 anhydro-N-acetylmuramic acid kinase low > 95
Klebsiella michiganensis M5al 0.26 BWI76_RS18125 murein DD-endopeptidase MepM 0.44 BWI76_RS16420 anhydro-N-acetylmuramic acid kinase low > 92

Not shown: 0 genomes with orthologs for Shew_2455 only; 74 genomes with orthologs for Shew_1020 only