Conservation of cofitness between Shew_2455 and Shew_0315 in Shewanella loihica PV-4

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella loihica PV-4 1.0 Shew_2455 peptidase M23B (RefSeq) 1.0 Shew_0315 HemY domain-containing protein (RefSeq) 0.45 15
Shewanella sp. ANA-3 0.68 Shewana3_2610 peptidase M23B (RefSeq) 0.48 Shewana3_0383 HemY domain-containing protein (RefSeq) — —
Shewanella oneidensis MR-1 0.68 SO2842 peptidase, M23/M37 family (NCBI ptt file) 0.48 SO4316 hemY protein, putative (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.66 Sama_1269 M24/M37 family peptidase (RefSeq) 0.45 Sama_3257 HemY protein (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_14420 peptidase M23 0.14 CSW01_00595 heme biosynthesis protein HemY low > 62
Pantoea agglomerans CFBP13505 P0401 0.31 PagCFBP13505_RS02350 murein DD-endopeptidase MepM 0.14 PagCFBP13505_RS15420 protoheme IX biogenesis protein HemY low > 74
Pantoea sp. MT58 0.30 IAI47_08470 murein DD-endopeptidase MepM 0.14 IAI47_18440 protoheme IX biogenesis protein HemY low > 76
Rahnella sp. WP5 0.29 EX31_RS10670 murein DD-endopeptidase MepM 0.16 EX31_RS15130 protoheme IX biogenesis protein HemY low > 89
Serratia liquefaciens MT49 0.28 IAI46_14600 murein DD-endopeptidase MepM 0.15 IAI46_00680 protoheme IX biogenesis protein HemY low > 86
Erwinia amylovora T8 0.28 OLJFJH_12880 murein DD-endopeptidase MepM 0.13 OLJFJH_06375 protoheme IX biogenesis protein HemY low > 58
Pectobacterium carotovorum WPP14 0.28 HER17_RS11800 murein DD-endopeptidase MepM 0.13 HER17_RS01300 protoheme IX biogenesis protein HemY low > 75
Escherichia coli ECOR27 0.27 NOLOHH_16750 mepM murein DD-endopeptidase MepM 0.14 NOLOHH_06610 hemY protoheme IX biogenesis protein HemY low > 76
Escherichia coli BW25113 0.27 b1856 yebA orf, hypothetical protein (VIMSS) 0.14 b3802 hemY predicted protoheme IX synthesis protein (NCBI) low > 76
Escherichia coli ECRC98 0.27 JDDGAC_00885 mepM murein DD-endopeptidase MepM 0.14 JDDGAC_18090 hemY protoheme IX biogenesis protein HemY 0.31 17
Escherichia coli ECRC102 0.27 NIAGMN_01750 mepM murein DD-endopeptidase MepM 0.14 NIAGMN_12220 hemY protoheme IX biogenesis protein HemY low > 80
Escherichia coli Nissle 1917 0.27 ECOLIN_RS10340 murein DD-endopeptidase MepM 0.14 ECOLIN_RS21820 protoheme IX biogenesis protein HemY — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_01872 Murein DD-endopeptidase MepM 0.14 OHPLBJKB_04251 Protein HemY 0.67 38
Escherichia coli ECRC99 0.27 KEDOAH_01795 mepM murein DD-endopeptidase MepM 0.14 KEDOAH_13685 hemY protoheme IX biogenesis protein HemY — —
Escherichia coli BL21 0.27 ECD_01827 murein DD-endopeptidase, space-maker hydrolase, septation protein 0.14 ECD_03677 putative protoheme IX synthesis protein 0.69 2
Escherichia coli ECRC100 0.27 OKFHMN_26310 mepM murein DD-endopeptidase MepM 0.14 OKFHMN_14465 hemY protoheme IX biogenesis protein HemY low > 79
Escherichia coli ECRC101 0.27 MCAODC_19095 mepM murein DD-endopeptidase MepM 0.14 MCAODC_04970 hemY protoheme IX biogenesis protein HemY low > 88
Escherichia coli ECOR38 0.27 HEPCGN_04715 mepM murein DD-endopeptidase MepM 0.14 HEPCGN_13185 hemY protoheme IX biogenesis protein HemY low > 88
Escherichia coli ECRC62 0.27 BNILDI_15540 mepM murein DD-endopeptidase MepM 0.14 BNILDI_04925 hemY protoheme IX biogenesis protein HemY low > 75
Escherichia fergusonii Becca 0.27 EFB2_02086 Murein DD-endopeptidase MepM 0.14 EFB2_04836 Protein HemY low > 86
Enterobacter asburiae PDN3 0.26 EX28DRAFT_0700 Membrane proteins related to metalloendopeptidases 0.13 EX28DRAFT_4471 heme biosynthesis-associated TPR protein low > 76
Enterobacter sp. TBS_079 0.26 MPMX20_02761 Murein DD-endopeptidase MepM 0.14 MPMX20_04473 Protein HemY low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF1635 Cell wall endopeptidase, family M23/M37 0.13 GFF226 Uncharacterized protein EC-HemY, likely associated with heme metabolism based on gene clustering with hemC, hemD in Proteobacteria (unrelated to HemY-type PPO in GramPositives) 0.71 26
Klebsiella pneumoniae MKP103 0.26 KDGMDA_25390 murein DD-endopeptidase MepM 0.13 KDGMDA_09655 protoheme IX biogenesis protein HemY low > 95
Klebsiella michiganensis M5al 0.26 BWI76_RS18125 murein DD-endopeptidase MepM 0.12 BWI76_RS01165 protoheme IX biogenesis protein HemY 0.28 15

Not shown: 0 genomes with orthologs for Shew_2455 only; 4 genomes with orthologs for Shew_0315 only