Conservation of cofitness between BT3361 and BT1970 in Bacteroides thetaiotaomicron VPI-5482

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT3361 erythronate-4-phosphate dehydrogenase (NCBI ptt file) 1.0 BT1970 glutamate dehydrogenase (NCBI ptt file) 0.85 17
Bacteroides ovatus ATCC 8483 0.84 BACOVA_01953 4-phosphoerythronate dehydrogenase 0.99 BACOVA_00094 NAD(P)-specific glutamate dehydrogenase 0.78 28
Bacteroides stercoris CC31F 0.76 HMPREF1181_RS02440 4-phosphoerythronate dehydrogenase PdxB 0.94 HMPREF1181_RS07835 NADP-specific glutamate dehydrogenase — —
Phocaeicola vulgatus CL09T03C04 0.62 HMPREF1058_RS10820 4-phosphoerythronate dehydrogenase PdxB 0.95 HMPREF1058_RS02115 NADP-specific glutamate dehydrogenase 0.90 7
Phocaeicola dorei CL03T12C01 0.62 ABI39_RS06250 4-phosphoerythronate dehydrogenase PdxB 0.95 ABI39_RS01300 NADP-specific glutamate dehydrogenase 0.76 20
Parabacteroides merdae CL09T00C40 0.51 HMPREF1078_RS19150 4-phosphoerythronate dehydrogenase PdxB 0.88 HMPREF1078_RS13375 NADP-specific glutamate dehydrogenase 0.80 5
Rahnella sp. WP5 0.34 EX31_RS19610 4-phosphoerythronate dehydrogenase PdxB 0.61 EX31_RS08255 NADP-specific glutamate dehydrogenase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF1936 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) 0.59 GFF3487 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) low > 78
Escherichia coli Nissle 1917 0.32 ECOLIN_RS13445 4-phosphoerythronate dehydrogenase PdxB 0.60 ECOLIN_RS09810 NADP-specific glutamate dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_01385 Erythronate-4-phosphate dehydrogenase 0.60 OHPLBJKB_01971 NADP-specific glutamate dehydrogenase low > 73
Escherichia coli BL21 0.32 ECD_02245 erythronate-4-phosphate dehydrogenase 0.60 ECD_01730 glutamate dehydrogenase, NADP-specific — —
Escherichia fergusonii Becca 0.32 EFB2_01538 Erythronate-4-phosphate dehydrogenase 0.60 EFB2_02232 NADP-specific glutamate dehydrogenase low > 86
Escherichia coli ECRC98 0.32 JDDGAC_26620 pdxB 4-phosphoerythronate dehydrogenase PdxB 0.60 JDDGAC_01415 gdhA NADP-specific glutamate dehydrogenase — —
Escherichia coli ECRC101 0.32 MCAODC_13700 pdxB 4-phosphoerythronate dehydrogenase PdxB 0.60 MCAODC_18570 gdhA NADP-specific glutamate dehydrogenase — —
Escherichia coli ECRC99 0.32 KEDOAH_05535 pdxB 4-phosphoerythronate dehydrogenase PdxB 0.60 KEDOAH_01270 gdhA NADP-specific glutamate dehydrogenase — —
Escherichia coli ECRC101 0.32 OKFHMN_22660 pdxB 4-phosphoerythronate dehydrogenase PdxB 0.60 OKFHMN_26840 gdhA NADP-specific glutamate dehydrogenase — —
Escherichia coli ECRC102 0.32 NIAGMN_20435 pdxB 4-phosphoerythronate dehydrogenase PdxB 0.60 NIAGMN_01225 gdhA NADP-specific glutamate dehydrogenase — —
Escherichia coli ECOR27 0.31 NOLOHH_14295 pdxB 4-phosphoerythronate dehydrogenase PdxB 0.60 NOLOHH_17355 gdhA NADP-specific glutamate dehydrogenase — —
Enterobacter asburiae PDN3 0.31 EX28DRAFT_0284 Phosphoglycerate dehydrogenase and related dehydrogenases 0.59 EX28DRAFT_1763 Glutamate dehydrogenase/leucine dehydrogenase low > 76
Escherichia coli ECRC62 0.31 BNILDI_13215 pdxB 4-phosphoerythronate dehydrogenase PdxB 0.60 BNILDI_16140 gdhA NADP-specific glutamate dehydrogenase — —
Escherichia coli ECOR38 0.31 HEPCGN_21865 pdxB 4-phosphoerythronate dehydrogenase PdxB 0.60 HEPCGN_05205 gdhA NADP-specific glutamate dehydrogenase low > 85
Escherichia coli BW25113 0.31 b2320 pdxB erythronate-4-phosphate dehydrogenase (NCBI) 0.60 b1761 gdhA glutamate dehydrogenase (NCBI) low > 76
Klebsiella michiganensis M5al 0.31 BWI76_RS20390 erythronate-4-phosphate dehydrogenase 0.60 BWI76_RS11610 glutamate dehydrogenase low > 92
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_4048 Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290) 0.63 PfGW456L13_1455 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) — —
Enterobacter sp. TBS_079 0.31 MPMX20_03255 Erythronate-4-phosphate dehydrogenase 0.59 MPMX20_01854 NADP-specific glutamate dehydrogenase low > 85
Serratia liquefaciens MT49 0.30 IAI46_17850 4-phosphoerythronate dehydrogenase PdxB 0.58 IAI46_24165 NADP-specific glutamate dehydrogenase low > 86
Erwinia tracheiphila SCR3 0.30 LU632_RS07815 DUF3410 domain-containing protein 0.20 LU632_RS12465 Glu/Leu/Phe/Val dehydrogenase — —
Pseudomonas simiae WCS417 0.30 PS417_07535 erythronate-4-phosphate dehydrogenase 0.63 PS417_24260 glutamate dehydrogenase — —
Pectobacterium carotovorum WPP14 0.29 HER17_RS06980 4-phosphoerythronate dehydrogenase PdxB 0.59 HER17_RS21320 NADP-specific glutamate dehydrogenase low > 75
Acinetobacter radioresistens SK82 0.29 MPMX26_02238 Erythronate-4-phosphate dehydrogenase 0.64 MPMX26_02304 NADP-specific glutamate dehydrogenase low > 36
Pseudomonas putida KT2440 0.29 PP_2117 Erythronate-4-phosphate dehydrogenase 0.64 PP_0675 glutamate dehydrogenase, NADP-dependent — —
Pseudomonas fluorescens SBW25 0.29 PFLU_RS07615 4-phosphoerythronate dehydrogenase PdxB 0.63 PFLU_RS26175 NADP-specific glutamate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS07615 4-phosphoerythronate dehydrogenase PdxB 0.63 PFLU_RS26175 NADP-specific glutamate dehydrogenase — —
Pantoea sp. MT58 0.29 IAI47_06235 4-phosphoerythronate dehydrogenase PdxB 0.19 IAI47_20110 Glu/Leu/Phe/Val dehydrogenase low > 76
Pseudomonas stutzeri RCH2 0.29 Psest_2548 Phosphoglycerate dehydrogenase and related dehydrogenases 0.63 Psest_3438 Glutamate dehydrogenase/leucine dehydrogenase — —

Not shown: 19 genomes with orthologs for BT3361 only; 23 genomes with orthologs for BT1970 only