| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BW25113 | 1.0 | b4213 | cpdB | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (NCBI) | 1.0 | b3283 | yrdD | predicted DNA topoisomerase (NCBI) | 0.27 | 4 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS24475 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 0.99 | ECOLIN_RS18850 | | type I DNA topoisomerase | low | > 52 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_10240 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 0.99 | HEPCGN_16375 | yrdD | Uncharacterized protein YrdD | low | > 85 |
| Escherichia fergusonii Becca | 1.00 | EFB2_04315 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.99 | EFB2_00540 | | DNA topoisomerase 1 | low | > 86 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_04305 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 0.99 | NOLOHH_09345 | yrdD | Uncharacterized protein YrdD | low | > 57 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_07215 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 0.99 | BNILDI_02175 | yrdD | Uncharacterized protein YrdD | — | — |
| Escherichia coli ECRC101 | 0.99 | MCAODC_02560 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | MCAODC_08075 | yrdD | Uncharacterized protein YrdD | — | — |
| Escherichia coli BL21 | 0.99 | ECD_04085 | | 2':3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | ECD_03134 | | ssDNA-binding protein, function unknown | low | > 60 |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_09895 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | NIAGMN_15315 | yrdD | Uncharacterized protein YrdD | — | — |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_16110 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | KEDOAH_10595 | yrdD | Uncharacterized protein YrdD | — | — |
| Escherichia coli ECRC101 | 0.99 | OKFHMN_12045 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | OKFHMN_17555 | yrdD | Uncharacterized protein YrdD | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.99 | OHPLBJKB_03820 | | '2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase' transl_table=11 | 1.00 | OHPLBJKB_00420 | | DNA topoisomerase 1 | low | > 73 |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_15685 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 1.00 | JDDGAC_21175 | yrdD | Uncharacterized protein YrdD | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.92 | GFF866 | | '2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC 3.1.4.16)' transl_table=11 | 0.87 | GFF2395 | | Similar to C-terminal Zn-finger domain of DNA topoisomerase I | low | > 78 |
| Enterobacter asburiae PDN3 | 0.89 | EX28DRAFT_3400 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 0.85 | EX28DRAFT_0044 | | Zn-finger domain associated with topoisomerase type I | low | > 76 |
| Enterobacter sp. TBS_079 | 0.88 | MPMX20_00491 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.84 | MPMX20_04191 | | DNA topoisomerase 1 | low | > 85 |
| Klebsiella michiganensis M5al | 0.88 | BWI76_RS02730 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase | 0.88 | BWI76_RS25655 | | DNA topoisomerase type IA zn finger domain-containing protein | low | > 92 |
| Serratia liquefaciens MT49 | 0.81 | IAI46_01740 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.75 | IAI46_23250 | | topoisomerase DNA-binding C4 zinc finger domain-containing protein | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.80 | HER17_RS03950 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.77 | HER17_RS02240 | | topoisomerase DNA-binding C4 zinc finger domain-containing protein | low | > 75 |
| Rahnella sp. WP5 | 0.79 | EX31_RS08725 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.76 | EX31_RS15960 | | hypothetical protein | low | > 89 |
| Pantoea sp. MT58 | 0.78 | IAI47_02690 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.78 | IAI47_02305 | | topoisomerase DNA-binding C4 zinc finger domain-containing protein | low | > 76 |
| Dickeya dianthicola ME23 | 0.78 | DZA65_RS18330 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.74 | DZA65_RS20325 | | hypothetical protein | low | > 75 |
| Dickeya dadantii 3937 | 0.78 | DDA3937_RS17185 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.75 | DDA3937_RS22495 | | topoisomerase DNA-binding C4 zinc finger domain-containing protein | low | > 74 |
| Dickeya dianthicola 67-19 | 0.78 | HGI48_RS17240 | | bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.74 | HGI48_RS19200 | | topoisomerase DNA-binding C4 zinc finger domain-containing protein | low | > 71 |
| Vibrio cholerae E7946 ATCC 55056 | 0.69 | CSW01_12970 | | 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | 0.53 | CSW01_00255 | | DNA topoisomerase | low | > 62 |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_1585 | cpdB | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (RefSeq) | 0.44 | Shewana3_0039 | | DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.56 | SO3565 | cpdB | 2',3'-cyclic-nucleotide 2'-phosphodiesterase (NCBI ptt file) | 0.43 | SO0036 | | topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.55 | Sama_1563 | cpdB | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (RefSeq) | 0.44 | Sama_0048 | | topoisomerase DNA-binding C4 zinc finger domain-containing protein (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.54 | Shew_2162 | cpdB | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein (RefSeq) | 0.45 | Shew_3731 | | DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) | low | > 60 |
Not shown: 22 genomes with orthologs for b4213 only; 2 genomes with orthologs for b3283 only