| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Sinorhizobium meliloti 1021 | 1.0 | SM_b20033 | | transcriptional regulator | 1.0 | SM_b21636 | | ferredoxin reductase electron transfer protein | 0.24 | 13 |
| Ralstonia solanacearum IBSBF1503 | 0.59 | RALBFv3_RS17460 | | TetR/AcrR family transcriptional regulator | 0.44 | RALBFv3_RS20640 | | phenylacetate-CoA oxygenase/reductase subunit PaaK | low | > 76 |
| Ralstonia solanacearum UW163 | 0.59 | UW163_RS21690 | | TetR/AcrR family transcriptional regulator | 0.44 | UW163_RS18535 | | phenylacetate-CoA oxygenase/reductase subunit PaaK | — | — |
| Ralstonia solanacearum PSI07 | 0.58 | RPSI07_RS06190 | | TetR/AcrR family transcriptional regulator | 0.44 | RPSI07_RS02150 | | phenylacetate-CoA oxygenase/reductase subunit PaaK | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.58 | RS_RS23855 | | TetR/AcrR family transcriptional regulator | 0.44 | RS_RS20025 | | phenylacetate-CoA oxygenase/reductase subunit PaaK | low | > 80 |
| Azospirillum sp. SherDot2 | 0.57 | MPMX19_03530 | | HTH-type transcriptional repressor NicS | 0.45 | MPMX19_05774 | | 1,2-phenylacetyl-CoA epoxidase, subunit E | low | > 112 |
| Burkholderia phytofirmans PsJN | 0.52 | BPHYT_RS22695 | | TetR family transcriptional regulator | 0.45 | BPHYT_RS18270 | | phenylacetic acid degradation protein | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_1426 | | Transcriptional regulator, TetR family | 0.51 | PfGW456L13_2423 | | Phenylacetate-CoA oxygenase/reductase, PaaK subunit | low | > 87 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.52 | H281DRAFT_03218 | | transcriptional regulator, TetR family | 0.45 | H281DRAFT_05854 | | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE | 0.59 | 4 |
| Paraburkholderia graminis OAS925 | 0.51 | ABIE53_004073 | | AcrR family transcriptional regulator | 0.46 | ABIE53_000007 | | ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE | low | > 113 |
| Pseudomonas sp. SVBP6 | 0.51 | COO64_RS02845 | | TetR/AcrR family transcriptional regulator | 0.50 | COO64_RS25485 | paaE | 1,2-phenylacetyl-CoA epoxidase subunit PaaE | low | > 93 |
| Pseudomonas putida KT2440 | 0.51 | PP_3527 | | Transcriptional regulator, TetR family | 0.50 | PP_3274 | | ring 1,2-phenylacetyl-CoA epoxidase, reductase subunit | low | > 96 |
| Paraburkholderia sabiae LMG 24235 | 0.50 | QEN71_RS13120 | | TetR family transcriptional regulator | 0.47 | QEN71_RS28415 | | 1,2-phenylacetyl-CoA epoxidase subunit PaaE | low | > 153 |
| Pseudomonas sp. BP01 | 0.50 | JOY50_RS27395 | | TetR/AcrR family transcriptional regulator | 0.50 | JOY50_RS11905 | paaE | 1,2-phenylacetyl-CoA epoxidase subunit PaaE | — | — |
| Pseudomonas segetis P6 | 0.49 | MPMX49_02711 | | HTH-type transcriptional repressor NicS | 0.52 | MPMX49_01997 | | 1,2-phenylacetyl-CoA epoxidase, subunit E | low | > 75 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF5228 | | Transcriptional regulator, TetR family | 0.40 | GFF1689 | | Phenylacetate-CoA oxygenase/reductase, PaaK subunit | low | > 90 |
| Serratia liquefaciens MT49 | 0.35 | IAI46_12895 | | TetR family transcriptional regulator | 0.38 | IAI46_16370 | | phenylacetate-CoA oxygenase/reductase subunit PaaK | low | > 87 |
| Enterobacter sp. TBS_079 | 0.34 | MPMX20_00655 | | HTH-type transcriptional repressor NicS | 0.38 | MPMX20_02146 | | 1,2-phenylacetyl-CoA epoxidase, subunit E | low | > 85 |
| Enterobacter asburiae PDN3 | 0.34 | EX28DRAFT_3565 | | transcriptional regulator, TetR family | 0.38 | EX28DRAFT_1416 | | phenylacetate-CoA oxygenase/reductase, PaaK subunit | low | > 76 |
| Klebsiella michiganensis M5al | 0.33 | BWI76_RS16950 | | TetR family transcriptional regulator | 0.37 | BWI76_RS13110 | | phenylacetic acid degradation protein | low | > 92 |
| Klebsiella pneumoniae MKP103 | 0.32 | KDGMDA_24120 | | TetR family transcriptional regulator | 0.38 | KDGMDA_20720 | | phenylacetic acid degradation protein | low | > 95 |
Not shown: 23 genomes with orthologs for SM_b20033 only; 22 genomes with orthologs for SM_b21636 only