Conservation of cofitness between PP_3600 and PP_1165 in Pseudomonas putida KT2440

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3600 glucarate transporter 1.0 PP_1165 conserved protein of unknown function 0.49 3
Pseudomonas fluorescens GW456-L13 0.83 PfGW456L13_5043 D-galactarate permease 0.59 PfGW456L13_3510 Aldose 1-epimerase low > 87
Pseudomonas sp. RS175 0.82 PFR28_00144 putative glucarate transporter 0.54 PFR28_02441 putative protein YphB 0.70 2
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_3297 D-galactarate permease 0.57 Pf6N2E2_484 Aldose 1-epimerase low > 103
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_07175 glucarate transporter 0.54 AO356_23040 aldose epimerase low > 104
Pseudomonas fluorescens SBW25 0.82 PFLU_RS04245 MFS transporter 0.58 PFLU_RS19310 aldose 1-epimerase low > 109
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS04245 MFS transporter 0.58 PFLU_RS19310 aldose 1-epimerase 0.10 54
Pseudomonas simiae WCS417 0.82 PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) 0.57 PS417_17385 aldose epimerase low > 88
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_1108 D-galactarate permease 0.50 Pf1N1B4_4509 Aldose 1-epimerase low > 87
Pseudomonas syringae pv. syringae B728a 0.80 Psyr_4226 D-galactonate transporter 0.58 Psyr_0896 Aldose 1-epimerase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.80 Psyr_4226 D-galactonate transporter 0.58 Psyr_0896 Aldose 1-epimerase low > 86
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS15805 glucarate transporter 0.33 HSERO_RS05165 galactose-1-epimerase low > 78
Klebsiella michiganensis M5al 0.68 BWI76_RS22835 MFS transporter 0.15 BWI76_RS21200 aldose epimerase low > 92
Escherichia coli ECOR27 0.68 NOLOHH_12100 gudP galactarate/glucarate/glycerate transporter GudP 0.19 NOLOHH_13220 yphB Uncharacterized protein YphB low > 75
Escherichia fergusonii Becca 0.68 EFB2_01128 putative glucarate transporter 0.18 EFB2_01352 putative protein YphB low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_00942 putative glucarate transporter 0.19 OHPLBJKB_01165 putative protein YphB low > 73
Escherichia coli ECRC62 0.68 BNILDI_10605 gudP galactarate/glucarate/glycerate transporter GudP 0.19 BNILDI_12020 yphB Uncharacterized protein YphB low > 75
Escherichia coli ECOR38 0.68 HEPCGN_19475 gudP galactarate/glucarate/glycerate transporter GudP 0.19 HEPCGN_20690 yphB Uncharacterized protein YphB low > 87
Escherichia coli BL21 0.68 ECD_02634 putative D-glucarate transporter 0.19 ECD_02436 mutarotase superfamily protein, YphB family low > 61
Escherichia coli BW25113 0.68 b2789 gudP predicted D-glucarate transporter (NCBI) 0.19 b2544 yphB hypothetical protein (NCBI) low > 76
Escherichia coli ECRC100 0.68 OKFHMN_20220 gudP galactarate/glucarate/glycerate transporter GudP 0.19 OKFHMN_21550 yphB Uncharacterized protein YphB low > 80
Escherichia coli ECRC101 0.68 MCAODC_10745 gudP galactarate/glucarate/glycerate transporter GudP 0.19 MCAODC_12080 yphB Uncharacterized protein YphB low > 87
Escherichia coli ECRC102 0.68 NIAGMN_17990 gudP galactarate/glucarate/glycerate transporter GudP 0.19 NIAGMN_19320 yphB Uncharacterized protein YphB — —
Escherichia coli ECRC98 0.68 JDDGAC_23885 gudP galactarate/glucarate/glycerate transporter GudP 0.19 JDDGAC_25225 yphB Uncharacterized protein YphB low > 86
Escherichia coli ECRC99 0.68 KEDOAH_07910 gudP galactarate/glucarate/glycerate transporter GudP 0.19 KEDOAH_06670 yphB Uncharacterized protein YphB — —
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS31870 MFS transporter 0.31 QEN71_RS27070 aldose 1-epimerase 0.30 111
Ralstonia solanacearum GMI1000 0.66 RS_RS21080 MFS transporter 0.25 RS_RS13780 aldose 1-epimerase low > 80
Ralstonia solanacearum PSI07 0.66 RPSI07_RS03475 MFS transporter 0.26 RPSI07_RS11410 aldose 1-epimerase low > 81
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS20330 MFS transporter 0.26 ABZR87_RS01460 aldose 1-epimerase low > 80
Azospirillum sp. SherDot2 0.65 MPMX19_02893 putative glucarate transporter 0.23 MPMX19_01184 putative protein YphB low > 112

Not shown: 21 genomes with orthologs for PP_3600 only; 10 genomes with orthologs for PP_1165 only