Conservation of cofitness between IAI47_17210 and IAI47_08680 in Pantoea sp. MT58

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_17210 monofunctional biosynthetic peptidoglycan transglycosylase 1.0 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.34 5
Enterobacter sp. TBS_079 0.75 MPMX20_04113 Biosynthetic peptidoglycan transglycosylase 0.67 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F low > 85
Enterobacter asburiae PDN3 0.74 EX28DRAFT_3261 monofunctional biosynthetic peptidoglycan transglycosylase 0.67 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase low > 76
Escherichia coli Nissle 1917 0.74 ECOLIN_RS18455 monofunctional biosynthetic peptidoglycan transglycosylase 0.68 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Escherichia coli ECOR38 0.74 HEPCGN_16785 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.69 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 87
Escherichia fergusonii Becca 0.74 EFB2_00615 Biosynthetic peptidoglycan transglycosylase 0.68 EFB2_02166 Ribosomal RNA small subunit methyltransferase F low > 86
Escherichia coli ECRC62 0.73 BNILDI_01825 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.69 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 75
Escherichia coli BL21 0.73 ECD_03073 biosynthetic peptidoglycan transglycosylase 0.69 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_00492 Biosynthetic peptidoglycan transglycosylase 0.68 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F low > 73
Escherichia coli ECOR27 0.73 NOLOHH_09710 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.69 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Escherichia coli BW25113 0.73 b3208 mtgA monofunctional biosynthetic peptidoglycan transglycosylase (NCBI) 0.68 b1835 yebU putative nucleolar proteins (VIMSS) low > 76
Rahnella sp. WP5 0.73 EX31_RS12525 monofunctional biosynthetic peptidoglycan transglycosylase 0.62 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 89
Pectobacterium carotovorum WPP14 0.72 HER17_RS19890 monofunctional biosynthetic peptidoglycan transglycosylase 0.61 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 75
Escherichia coli ECRC102 0.72 NIAGMN_15670 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.69 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF2952 Monofunctional biosynthetic peptidoglycan transglycosylase (EC 2.4.2.-) 0.68 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) low > 78
Escherichia coli ECRC98 0.72 JDDGAC_21535 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.69 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 86
Escherichia coli ECRC100 0.72 OKFHMN_17910 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.69 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Escherichia coli ECRC101 0.72 MCAODC_08430 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.69 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 87
Escherichia coli ECRC99 0.72 KEDOAH_10240 mtgA monofunctional biosynthetic peptidoglycan transglycosylase 0.69 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF — —
Serratia liquefaciens MT49 0.72 IAI46_22325 monofunctional biosynthetic peptidoglycan transglycosylase 0.62 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 86
Klebsiella michiganensis M5al 0.70 BWI76_RS25290 monofunctional biosynthetic peptidoglycan transglycosylase 0.66 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 92
Dickeya dadantii 3937 0.69 DDA3937_RS01685 monofunctional biosynthetic peptidoglycan transglycosylase 0.60 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 74
Dickeya dianthicola 67-19 0.68 HGI48_RS01580 monofunctional biosynthetic peptidoglycan transglycosylase 0.60 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 71
Dickeya dianthicola ME23 0.68 DZA65_RS01655 monofunctional biosynthetic peptidoglycan transglycosylase 0.60 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF low > 75
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_1154 monofunctional biosynthetic peptidoglycan transglycosylase 0.17 Echvi_1153 tRNA and rRNA cytosine-C5-methylases low > 79
Shewanella sp. ANA-3 0.42 Shewana3_0858 monofunctional biosynthetic peptidoglycan transglycosylase (RefSeq) 0.47 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) low > 73
Shewanella oneidensis MR-1 0.41 SO3735 mtgA monofunctional biosynthetic peptidoglycan transglycosylase (NCBI ptt file) 0.47 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) 0.20 36
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS03785 monofunctional biosynthetic peptidoglycan transglycosylase 0.16 HMPREF1058_RS14300 rRNA cytosine-C5-methyltransferase low > 67
Phocaeicola dorei CL03T12C01 0.40 ABI39_RS17435 monofunctional biosynthetic peptidoglycan transglycosylase 0.15 ABI39_RS09930 rRNA cytosine-C5-methyltransferase low > 72
Bacteroides stercoris CC31F 0.40 HMPREF1181_RS12450 monofunctional biosynthetic peptidoglycan transglycosylase 0.18 HMPREF1181_RS08100 rRNA cytosine-C5-methyltransferase low > 56
Bacteroides ovatus ATCC 8483 0.40 BACOVA_03980 monofunctional biosynthetic peptidoglycan transglycosylase 0.17 BACOVA_00671 NOL1/NOP2/sun family protein low > 94
Bacteroides thetaiotaomicron VPI-5482 0.39 BT1195 monofunctional biosynthetic peptidoglycan transglycosylase (NCBI ptt file) 0.18 BT2042 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) low > 81
Pontibacter actiniarum KMM 6156, DSM 19842 0.38 CA264_06525 monofunctional biosynthetic peptidoglycan transglycosylase 0.16 CA264_05610 rRNA methyltransferase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.37 ABZR88_RS05045 monofunctional biosynthetic peptidoglycan transglycosylase 0.17 ABZR88_RS00225 RNA methyltransferase low > 71

Not shown: 38 genomes with orthologs for IAI47_17210 only; 5 genomes with orthologs for IAI47_08680 only