Conservation of cofitness between HER17_RS15240 and HER17_RS20360 in Pectobacterium carotovorum WPP14

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 1.0 HER17_RS20360 deoxyribonuclease V 0.59 10
Dickeya dianthicola ME23 0.98 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.78 DZA65_RS01235 deoxyribonuclease V low > 75
Dickeya dadantii 3937 0.98 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.77 DDA3937_RS01195 deoxyribonuclease V — —
Dickeya dianthicola 67-19 0.97 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.77 HGI48_RS01190 deoxyribonuclease V — —
Rahnella sp. WP5 0.95 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.68 EX31_RS16835 deoxyribonuclease V low > 89
Serratia liquefaciens MT49 0.95 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.77 IAI46_01340 deoxyribonuclease V low > 86
Pantoea sp. MT58 0.92 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.75 IAI47_18065 deoxyribonuclease V low > 76
Enterobacter asburiae PDN3 0.91 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.75 EX28DRAFT_4540 Endonuclease V (EC 3.1.21.-) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.75 GFF4194 Endonuclease V (EC 3.1.21.7) low > 78
Enterobacter sp. TBS_079 0.90 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.74 MPMX20_00221 Endonuclease V low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.74 OHPLBJKB_04052 Endonuclease V — —
Escherichia coli BW25113 0.90 b0636 ybeA hypothetical protein (NCBI) 0.75 b3998 nfi endonuclease V (deoxyinosine 3'endoduclease) (VIMSS) low > 76
Escherichia coli Nissle 1917 0.90 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.75 ECOLIN_RS23060 deoxyribonuclease V — —
Escherichia coli BL21 0.90 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.75 ECD_03875 endonuclease V; deoxyinosine 3 — —
Klebsiella michiganensis M5al 0.90 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.72 BWI76_RS01575 endonuclease V low > 92
Erwinia tracheiphila SCR3 0.90 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.70 LU632_RS00990 nfi deoxyribonuclease V low > 74
Escherichia coli ECRC62 0.90 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.74 BNILDI_06025 nfi deoxyribonuclease V — —
Escherichia coli ECRC99 0.90 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.75 KEDOAH_14805 nfi deoxyribonuclease V — —
Escherichia coli ECRC101 0.90 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.75 MCAODC_03855 nfi deoxyribonuclease V low > 87
Escherichia coli ECRC102 0.90 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.75 NIAGMN_11105 nfi deoxyribonuclease V — —
Escherichia coli ECOR27 0.90 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.75 NOLOHH_05500 nfi deoxyribonuclease V low > 75
Escherichia coli ECOR38 0.90 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.75 HEPCGN_11990 nfi deoxyribonuclease V low > 87
Escherichia coli ECRC98 0.90 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.75 JDDGAC_16980 nfi deoxyribonuclease V — —
Escherichia coli ECRC100 0.90 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.75 OKFHMN_13355 nfi deoxyribonuclease V low > 80
Escherichia fergusonii Becca 0.90 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.75 EFB2_04613 Endonuclease V low > 86
Pseudomonas sp. S08-1 0.63 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.45 OH686_08410 Endonuclease V low > 80
Pseudomonas stutzeri RCH2 0.61 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.42 Psest_0724 Deoxyinosine 3'endonuclease (endonuclease V) low > 67
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS09055 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.42 ABZR86_RS00305 deoxyribonuclease V low > 74
Dechlorosoma suillum PS 0.45 Dsui_0451 hypothetical protein 0.41 Dsui_0968 deoxyinosine 3'endonuclease (endonuclease V) low > 51
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS16470 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.35 CA265_RS09355 endonuclease V low > 88

Not shown: 67 genomes with orthologs for HER17_RS15240 only; 0 genomes with orthologs for HER17_RS20360 only