Conservation of cofitness between HER17_RS08615 and HER17_RS19695 in Pectobacterium carotovorum WPP14

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 1.0 HER17_RS19695 DedA family protein 0.84 3
Rahnella sp. WP5 0.85 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.79 EX31_RS08030 DedA family protein low > 89
Dickeya dianthicola 67-19 0.84 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.89 HGI48_RS01705 DedA family protein low > 71
Dickeya dianthicola ME23 0.84 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.89 DZA65_RS01780 DedA family protein low > 75
Dickeya dadantii 3937 0.84 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.89 DDA3937_RS01810 DedA family protein low > 74
Serratia liquefaciens MT49 0.83 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.74 IAI46_21730 DedA family protein low > 86
Klebsiella michiganensis M5al 0.83 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.66 BWI76_RS24290 membrane protein low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.69 GFF3121 DedA family inner membrane protein YghB low > 78
Enterobacter asburiae PDN3 0.82 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.69 EX28DRAFT_3047 Uncharacterized membrane-associated protein low > 76
Pantoea sp. MT58 0.82 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.77 IAI47_03210 DedA family protein low > 76
Escherichia coli ECRC62 0.82 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.70 BNILDI_00785 yghB Inner membrane protein YghB low > 75
Escherichia coli BW25113 0.82 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.70 b3009 yghB conserved inner membrane protein (NCBI) low > 76
Escherichia fergusonii Becca 0.82 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.70 EFB2_00801 Inner membrane protein YghB 0.59 21
Escherichia coli ECOR27 0.82 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.70 NOLOHH_10730 yghB Inner membrane protein YghB low > 75
Escherichia coli ECOR38 0.82 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.70 HEPCGN_17820 yghB Inner membrane protein YghB low > 87
Escherichia coli ECRC101 0.82 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.70 MCAODC_09470 yghB Inner membrane protein YghB low > 87
Escherichia coli ECRC98 0.82 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.70 JDDGAC_22590 yghB Inner membrane protein YghB low > 86
Escherichia coli ECRC99 0.82 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.70 KEDOAH_09190 yghB Inner membrane protein YghB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.70 OHPLBJKB_00692 Inner membrane protein YghB low > 73
Escherichia coli ECRC102 0.82 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.70 NIAGMN_16720 yghB Inner membrane protein YghB — —
Escherichia coli BL21 0.82 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.70 ECD_02882 general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter low > 61
Escherichia coli ECRC100 0.82 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.70 OKFHMN_18955 yghB Inner membrane protein YghB low > 80
Escherichia coli Nissle 1917 0.81 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.70 ECOLIN_RS17320 DedA family general envelope maintenance protein YghB low > 55
Enterobacter sp. TBS_079 0.80 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.70 MPMX20_03853 Inner membrane protein YghB low > 85
Erwinia tracheiphila SCR3 0.79 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.74 LU632_RS20550 DedA family protein low > 74
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.22 Pf6N2E2_4974 DedA protein low > 103
Pseudomonas sp. RS175 0.56 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.21 PFR28_03891 Protein DedA low > 88
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_20125 23S rRNA pseudouridylate synthase 0.21 AO356_15200 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_01405 23S rRNA pseudouridylate synthase 0.22 AO353_06585 hypothetical protein low > 101
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.22 PfGW456L13_1337 DedA protein low > 87
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS14155 pseudouridine synthase 0.24 RR42_RS17200 membrane protein — —
Acinetobacter radioresistens SK82 0.44 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C 0.23 MPMX26_00073 Protein DedA low > 36

Not shown: 51 genomes with orthologs for HER17_RS08615 only; 1 genomes with orthologs for HER17_RS19695 only