Conservation of cofitness between HER17_RS02010 and HER17_RS17030 in Pectobacterium carotovorum WPP14

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS02010 transcriptional regulator 1.0 HER17_RS17030 GntR family transcriptional regulator 0.51 12
Dickeya dadantii 3937 0.93 DDA3937_RS19340 transcriptional regulator 0.88 DDA3937_RS14985 GntR family transcriptional regulator low > 74
Dickeya dianthicola ME23 0.92 DZA65_RS20560 transcriptional regulator 0.86 DZA65_RS15825 GntR family transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.92 HGI48_RS19440 transcriptional regulator 0.86 HGI48_RS15080 GntR family transcriptional regulator low > 71
Rahnella sp. WP5 0.92 EX31_RS04470 transcriptional regulator 0.72 EX31_RS20380 GntR family transcriptional regulator low > 89
Serratia liquefaciens MT49 0.91 IAI46_23490 transcriptional regulator 0.81 IAI46_19045 GntR family transcriptional regulator low > 86
Escherichia coli ECRC99 0.89 KEDOAH_10840 yheO Uncharacterized protein YheO 0.62 KEDOAH_27420 ydfH DNA-binding transcriptional regulator YdfH — —
Escherichia coli ECRC100 0.89 OKFHMN_17300 yheO Uncharacterized protein YheO 0.62 OKFHMN_01010 ydfH DNA-binding transcriptional regulator YdfH — —
Escherichia coli ECRC101 0.89 MCAODC_07830 yheO Uncharacterized protein YheO 0.62 MCAODC_16915 ydfH DNA-binding transcriptional regulator YdfH low > 87
Escherichia coli ECRC102 0.89 NIAGMN_15070 yheO Uncharacterized protein YheO 0.62 NIAGMN_25155 ydfH DNA-binding transcriptional regulator YdfH — —
Escherichia coli ECRC98 0.89 JDDGAC_20930 yheO Uncharacterized protein YheO 0.62 JDDGAC_03520 ydfH DNA-binding transcriptional regulator YdfH low > 86
Escherichia coli ECOR27 0.89 NOLOHH_09100 yheO Uncharacterized protein YheO 0.62 NOLOHH_18635 ydfH DNA-binding transcriptional regulator YdfH — —
Escherichia coli BW25113 0.89 b3346 yheO orf, hypothetical protein (VIMSS) 0.62 b1540 ydfH predicted DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli BL21 0.89 ECD_03197 putative PAS domain-containing DNA-binding transcriptional regulator 0.62 ECD_01499 transcriptional repressor for rspAB — —
Escherichia coli ECRC62 0.89 BNILDI_02420 yheO Uncharacterized protein YheO 0.62 BNILDI_17125 ydfH DNA-binding transcriptional regulator YdfH low > 75
Escherichia fergusonii Becca 0.89 EFB2_00477 Transcriptional regulator DauR 0.62 EFB2_02416 HTH-type transcriptional repressor RspR low > 86
Escherichia coli Nissle 1917 0.89 ECOLIN_RS19165 transcriptional regulator 0.62 ECOLIN_RS08815 DNA-binding transcriptional regulator rspR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.89 OHPLBJKB_00357 Transcriptional regulator DauR 0.62 OHPLBJKB_02172 HTH-type transcriptional repressor RspR low > 73
Escherichia coli ECOR38 0.88 HEPCGN_16130 yheO Uncharacterized protein YheO 0.62 HEPCGN_26935 ydfH DNA-binding transcriptional regulator YdfH low > 87
Klebsiella michiganensis M5al 0.88 BWI76_RS25905 hypothetical protein 0.63 BWI76_RS15480 GntR family transcriptional regulator low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF3726 YheO-like PAS domain 0.57 GFF2496 Transcriptional regulator, GntR family low > 78
Enterobacter sp. TBS_079 0.88 MPMX20_04239 Transcriptional regulator DauR 0.61 MPMX20_02098 HTH-type transcriptional repressor RspR low > 85
Enterobacter asburiae PDN3 0.88 EX28DRAFT_4184 Uncharacterized protein conserved in bacteria 0.61 EX28DRAFT_1451 Transcriptional regulators low > 76
Pantoea sp. MT58 0.86 IAI47_02055 transcriptional regulator 0.67 IAI47_06815 GntR family transcriptional regulator low > 76
Shewanella oneidensis MR-1 0.34 SO1402 conserved hypothetical protein (NCBI ptt file) 0.16 SO2852 transcriptional regulator, GntR family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.34 Shewana3_2973 YheO domain-containing protein (RefSeq) 0.16 Shewana3_1582 GntR family transcriptional regulator (RefSeq) low > 73
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU2206 conserved hypothetical protein (TIGR) 0.15 DVU2644 transcriptional regulator, GntR family (TIGR) low > 55
Rhizobium sp. OAE497 0.14 ABIE40_RS21180 PAS domain-containing protein 0.34 ABIE40_RS25320 GntR family transcriptional regulator low > 107
Pseudomonas fluorescens FW300-N2E3 0.14 AO353_04640 hypothetical protein 0.15 AO353_24300 transcriptional regulator low > 101
Pseudomonas sp. RS175 0.12 PFR28_03547 Transcriptional regulator DauR 0.18 PFR28_01914 HTH-type transcriptional repressor RspR 0.32 81

Not shown: 6 genomes with orthologs for HER17_RS02010 only; 17 genomes with orthologs for HER17_RS17030 only