Conservation of cofitness between HER17_RS21350 and HER17_RS16010 in Pectobacterium carotovorum WPP14

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS21350 EAL domain-containing protein 1.0 HER17_RS16010 mechanosensitive ion channel 0.55 18
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF4237 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) 0.62 GFF4472 Uncharacterized protein ybdG low > 78
Escherichia coli ECRC99 0.30 KEDOAH_23215 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.60 KEDOAH_20295 ybdG mechanosensitive ion channel YbdG — —
Escherichia coli ECRC98 0.30 JDDGAC_08140 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.60 JDDGAC_11320 ybdG mechanosensitive ion channel YbdG low > 86
Escherichia coli ECRC101 0.30 MCAODC_23905 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.60 MCAODC_26890 ybdG mechanosensitive ion channel YbdG low > 87
Escherichia coli ECRC102 0.30 NIAGMN_23805 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.60 NIAGMN_05730 ybdG mechanosensitive ion channel YbdG — —
Escherichia coli ECRC100 0.30 OKFHMN_04530 eAL EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) 0.60 OKFHMN_07675 ybdG mechanosensitive ion channel YbdG — —
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_452 Rtn protein 0.35 Pf6N2E2_2677 Small-conductance mechanosensitive channel low > 103
Enterobacter sp. TBS_079 0.21 MPMX20_02720 putative cyclic di-GMP phosphodiesterase PdeD 0.60 MPMX20_01129 Miniconductance mechanosensitive channel YbdG low > 85
Pseudomonas fluorescens FW300-N1B4 0.21 Pf1N1B4_5006 Rtn protein 0.36 Pf1N1B4_544 Small-conductance mechanosensitive channel low > 87
Pseudomonas fluorescens GW456-L13 0.21 PfGW456L13_2932 Rtn protein 0.37 PfGW456L13_4452 Small-conductance mechanosensitive channel low > 87
Pseudomonas fluorescens SBW25-INTG 0.21 PFLU_RS14595 EAL domain-containing protein 0.37 PFLU_RS22200 mechanosensitive ion channel family protein low > 109
Pseudomonas fluorescens SBW25 0.21 PFLU_RS14595 EAL domain-containing protein 0.37 PFLU_RS22200 mechanosensitive ion channel family protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_22830 diguanylate phosphodiesterase 0.36 AO356_04215 mechanosensitive ion channel protein MscS low > 104
Klebsiella michiganensis M5al 0.21 BWI76_RS17880 c-di-GMP phosphodiesterase 0.61 BWI76_RS07440 miniconductance mechanosensitive channel low > 92
Enterobacter asburiae PDN3 0.20 EX28DRAFT_1790 FOG: EAL domain 0.60 EX28DRAFT_2431 Small-conductance mechanosensitive channel low > 76
Serratia liquefaciens MT49 0.20 IAI46_14800 EAL domain-containing protein 0.65 IAI46_04810 mechanosensitive ion channel low > 86
Escherichia fergusonii Becca 0.20 EFB2_01680 putative cyclic di-GMP phosphodiesterase PdeN 0.60 EFB2_03517 Miniconductance mechanosensitive channel YbdG low > 86
Escherichia coli ECOR38 0.20 HEPCGN_22660 pdeN cyclic di-GMP phosphodiesterase 0.60 HEPCGN_00615 ybdG mechanosensitive ion channel YbdG low > 87
Escherichia coli ECRC62 0.20 BNILDI_13890 pdeN cyclic di-GMP phosphodiesterase 0.60 BNILDI_22065 ybdG mechanosensitive ion channel YbdG low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.20 OHPLBJKB_01533 putative cyclic di-GMP phosphodiesterase PdeN 0.60 OHPLBJKB_03132 Miniconductance mechanosensitive channel YbdG low > 73
Escherichia coli ECOR27 0.20 NOLOHH_14970 pdeN cyclic di-GMP phosphodiesterase 0.60 NOLOHH_24055 ybdG mechanosensitive ion channel YbdG low > 75
Escherichia coli BW25113 0.20 b2176 rtn hypothetical protein (NCBI) 0.60 b0577 ybdG predicted mechanosensitive channel (NCBI) low > 76
Escherichia coli Nissle 1917 0.20 ECOLIN_RS12725 cyclic di-GMP phosphodiesterase 0.60 ECOLIN_RS03155 mechanosensitive ion channel YbdG — —
Escherichia coli BL21 0.20 ECD_02106 resistance protein for phages lambda and N4, putative membrane-anchored cyclic-di-GMP phosphodiesterase 0.60 ECD_00538 mechanosensitive channel protein, miniconductance low > 61
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_26940 diguanylate phosphodiesterase 0.37 AO353_18300 mechanosensitive ion channel protein MscS low > 101
Shewanella oneidensis MR-1 0.19 SO3821 rtn protein (NCBI ptt file) 0.42 SO0121 hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) low > 76
Pseudomonas putida KT2440 0.19 PP_3435 conserved protein of unknown function 0.37 PP_4533 mechanosensitive channel of miniconductance low > 96
Erwinia tracheiphila SCR3 0.17 LU632_RS13190 cyclic diguanylate phosphodiesterase 0.54 LU632_RS06755 mechanosensitive ion channel family protein low > 74
Paraburkholderia sabiae LMG 24235 0.16 QEN71_RS37740 EAL domain-containing protein 0.26 QEN71_RS37970 mechanosensitive ion channel low > 153

Not shown: 7 genomes with orthologs for HER17_RS21350 only; 20 genomes with orthologs for HER17_RS16010 only