Conservation of cofitness between HER17_RS12475 and HER17_RS15480 in Pectobacterium carotovorum WPP14

20 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12475 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 1.0 HER17_RS15480 TonB-dependent siderophore receptor 0.69 10
Dickeya dadantii 3937 0.79 DDA3937_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.76 DDA3937_RS05980 TonB-dependent receptor low > 74
Dickeya dianthicola 67-19 0.79 HGI48_RS09505 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.76 HGI48_RS06025 TonB-dependent siderophore receptor low > 71
Dickeya dianthicola ME23 0.78 DZA65_RS09815 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.76 DZA65_RS06370 TonB-dependent siderophore receptor low > 75
Serratia liquefaciens MT49 0.78 IAI46_08395 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.72 IAI46_04645 TonB-dependent siderophore receptor low > 86
Rahnella sp. WP5 0.75 EX31_RS09605 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.32 EX31_RS01210 TonB-dependent siderophore receptor low > 89
Pantoea sp. MT58 0.74 IAI47_13020 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.33 IAI47_19415 TonB-dependent siderophore receptor low > 76
Enterobacter sp. TBS_079 0.73 MPMX20_01500 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.43 MPMX20_03876 Metal-pseudopaline receptor CntO low > 85
Escherichia coli ECRC101 0.73 MCAODC_25150 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.44 MCAODC_09350 fhuE TonB-dependent siderophore receptor low > 87
Escherichia coli Nissle 1917 0.73 ECOLIN_RS04575 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.44 ECOLIN_RS17485 TonB-dependent siderophore receptor low > 55
Escherichia coli ECRC102 0.73 NIAGMN_03980 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.44 NIAGMN_16600 fhuE TonB-dependent siderophore receptor — —
Escherichia fergusonii Becca 0.73 EFB2_03202 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.44 EFB2_00779 Metal-pseudopaline receptor CntO low > 86
Escherichia coli ECRC99 0.73 KEDOAH_21975 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.44 KEDOAH_09310 fhuE TonB-dependent siderophore receptor — —
Escherichia coli ECRC100 0.73 OKFHMN_05935 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.44 OKFHMN_18835 fhuE TonB-dependent siderophore receptor low > 80
Escherichia coli ECRC98 0.72 JDDGAC_09570 rlmC 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC 0.44 JDDGAC_22470 fhuE TonB-dependent siderophore receptor low > 86
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2094 23S rRNA (uracil-5-)-methyltransferase RumB 0.43 EX28DRAFT_3067 TonB-dependent siderophore receptor low > 76
Klebsiella michiganensis M5al 0.70 BWI76_RS09485 23S rRNA (uracil(747)-C(5))-methyltransferase 0.44 BWI76_RS16835 TonB-dependent siderophore receptor low > 92
Shewanella oneidensis MR-1 0.54 SO0980 RNA methyltransferase, TrmA family (NCBI ptt file) 0.16 SO1156 TonB-dependent receptor (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.53 Shew_0801 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.13 Shew_3841 TonB-dependent siderophore receptor (RefSeq) low > 60
Shewanella sp. ANA-3 0.53 Shewana3_3309 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.17 Shewana3_0983 TonB-dependent siderophore receptor (RefSeq) low > 73
Shewanella amazonensis SB2B 0.51 Sama_0630 rumB 23S rRNA methyluridine methyltransferase (RefSeq) 0.13 Sama_3641 TonB-dependent receptor, putative (RefSeq) low > 62

Not shown: 9 genomes with orthologs for HER17_RS12475 only; 36 genomes with orthologs for HER17_RS15480 only