Conservation of cofitness between HER17_RS14245 and HER17_RS08355 in Pectobacterium carotovorum WPP14

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS14245 response regulator transcription factor 1.0 HER17_RS08355 RNA polymerase sigma factor FliA 0.52 20
Escherichia coli ECRC99 0.69 KEDOAH_19265 citB DNA-binding response regulator 0.81 KEDOAH_02310 fliA RNA polymerase sigma factor FliA — —
Escherichia coli ECRC98 0.69 JDDGAC_12360 citB DNA-binding response regulator 0.81 JDDGAC_00370 fliA RNA polymerase sigma factor FliA low > 86
Escherichia coli ECRC101 0.69 MCAODC_27935 citB DNA-binding response regulator 0.81 MCAODC_19610 fliA RNA polymerase sigma factor FliA low > 87
Escherichia coli ECRC102 0.69 NIAGMN_06760 citB DNA-binding response regulator 0.81 NIAGMN_02270 fliA RNA polymerase sigma factor FliA — —
Escherichia coli ECRC100 0.69 OKFHMN_08705 citB DNA-binding response regulator 0.81 OKFHMN_25780 fliA RNA polymerase sigma factor FliA low > 80
Vibrio cholerae E7946 ATCC 55056 0.60 CSW01_17605 DNA-binding response regulator 0.43 CSW01_10335 RNA polymerase sigma factor FliA low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF304 Transcriptional regulatory protein UhpA 0.82 GFF1690 RNA polymerase sigma factor for flagellar operon low > 78
Enterobacter asburiae PDN3 0.42 EX28DRAFT_3952 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 0.82 EX28DRAFT_0625 RNA polymerase sigma factor, FliA/WhiG family low > 76
Enterobacter sp. TBS_079 0.41 MPMX20_00033 Transcriptional regulatory protein UhpA 0.82 MPMX20_02847 RNA polymerase sigma factor FliA low > 85
Escherichia coli ECOR38 0.41 HEPCGN_13905 uhpA_G97D DNA-binding response regulator UhpA 0.81 HEPCGN_04135 fliA RNA polymerase sigma factor FliA low > 87
Escherichia coli Nissle 1917 0.41 ECOLIN_RS21160 transcriptional regulator UhpA 0.81 ECOLIN_RS10975 RNA polymerase sigma factor FliA low > 55
Escherichia coli ECRC62 0.41 BNILDI_04190 uhpA_G97D DNA-binding response regulator UhpA 0.81 BNILDI_15190 fliA RNA polymerase sigma factor FliA low > 75
Escherichia coli BW25113 0.41 b3669 uhpA DNA-binding response regulator in two-component regulatory system wtih UhpB (NCBI) 0.81 b1922 fliA flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) low > 76
Escherichia fergusonii Becca 0.41 EFB2_00029 Transcriptional regulatory protein UhpA 0.81 EFB2_02023 RNA polymerase sigma factor FliA low > 86
Dickeya dianthicola 67-19 0.41 HGI48_RS02840 transcriptional regulator UhpA 0.94 HGI48_RS13350 RNA polymerase sigma factor FliA low > 71
Escherichia coli HS(pFamp)R (ATCC 700891) 0.41 OHPLBJKB_00031 Transcriptional regulatory protein UhpA 0.81 OHPLBJKB_01807 RNA polymerase sigma factor FliA low > 73
Escherichia coli ECOR27 0.41 NOLOHH_07335 uhpA_G97D DNA-binding response regulator UhpA 0.81 NOLOHH_16400 fliA RNA polymerase sigma factor FliA low > 75
Dickeya dianthicola ME23 0.41 DZA65_RS03015 transcriptional regulator UhpA 0.94 DZA65_RS13835 RNA polymerase sigma factor FliA low > 75
Dickeya dadantii 3937 0.41 DDA3937_RS02865 transcriptional regulator UhpA 0.95 DDA3937_RS13300 RNA polymerase sigma factor FliA low > 74
Serratia liquefaciens MT49 0.40 IAI46_00435 transcriptional regulator UhpA 0.86 IAI46_15785 RNA polymerase sigma factor FliA low > 86
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS05670 response regulator transcription factor 0.39 ABZR86_RS20265 RNA polymerase sigma factor FliA low > 74
Pseudomonas stutzeri RCH2 0.34 Psest_2048 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 0.45 Psest_1740 RNA polymerase sigma factor, FliA/WhiG family low > 67
Paraburkholderia graminis OAS925 0.33 ABIE53_005478 two-component system invasion response regulator UvrY 0.48 ABIE53_000108 RNA polymerase sigma factor for flagellar operon FliA 0.25 89
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_01334 two component transcriptional regulator, LuxR family 0.48 H281DRAFT_05756 RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG — —
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_07345 citB DNA-binding response regulator 0.40 OKGIIK_02830 fliA RNA polymerase sigma factor FliA low > 52
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS32670 response regulator transcription factor 0.48 QEN71_RS28940 RNA polymerase sigma factor FliA low > 153
Alteromonas macleodii MIT1002 0.30 MIT1002_03526 Nitrogen regulation protein C 0.42 MIT1002_01103 Sigma-F factor low > 70
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.4961.1 Two-component system regulatory protein 0.37 Xcc-8004.2832.1 RNA polymerase sigma factor for flagellar operon low > 74
Mycobacterium tuberculosis H37Rv 0.26 Rv3133c Two component transcriptional regulatory protein DevR (probably LuxR/UhpA-family) 0.17 Rv3286c Alternative RNA polymerase sigma factor SigF low > 58

Not shown: 10 genomes with orthologs for HER17_RS14245 only; 40 genomes with orthologs for HER17_RS08355 only