Conservation of cofitness between HEPCGN_20540 and HEPCGN_18610 in Escherichia coli ECOR38

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_20540 rseC SoxR-reducing system protein RseC 1.0 HEPCGN_18610 speA biosynthetic arginine decarboxylase 0.90 13
Escherichia fergusonii Becca 1.00 EFB2_01326 Protein RseC 1.00 EFB2_00962 Biosynthetic arginine decarboxylase low > 86
Escherichia coli BW25113 0.99 b2570 rseC RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) 1.00 b2938 speA arginine decarboxylase (NCBI) 0.21 57
Escherichia coli ECOR27 0.99 NOLOHH_13070 rseC SoxR-reducing system protein RseC 1.00 NOLOHH_11175 speA biosynthetic arginine decarboxylase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_01137 Protein RseC 1.00 OHPLBJKB_00778 Biosynthetic arginine decarboxylase low > 73
Escherichia coli ECRC62 0.99 BNILDI_11870 rseC SoxR-reducing system protein RseC 1.00 BNILDI_09755 speA biosynthetic arginine decarboxylase low > 75
Escherichia coli ECRC100 0.99 OKFHMN_21395 rseC SoxR-reducing system protein RseC 1.00 OKFHMN_19305 speA biosynthetic arginine decarboxylase low > 80
Escherichia coli BL21 0.99 ECD_02464 SoxR iron-sulfur cluster reduction factor component 1.00 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding 0.69 21
Escherichia coli ECRC101 0.99 MCAODC_11925 rseC SoxR-reducing system protein RseC 1.00 MCAODC_09825 speA biosynthetic arginine decarboxylase low > 87
Escherichia coli ECRC98 0.99 JDDGAC_25060 rseC SoxR-reducing system protein RseC 1.00 JDDGAC_22935 speA biosynthetic arginine decarboxylase low > 86
Escherichia coli ECRC99 0.99 KEDOAH_06830 rseC SoxR-reducing system protein RseC 1.00 KEDOAH_08835 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC102 0.99 NIAGMN_19165 rseC SoxR-reducing system protein RseC 1.00 NIAGMN_17070 speA biosynthetic arginine decarboxylase — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14545 SoxR-reducing system protein RseC 1.00 ECOLIN_RS16350 biosynthetic arginine decarboxylase low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF2110 Sigma factor RpoE regulatory protein RseC 0.94 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.73 26
Klebsiella michiganensis M5al 0.78 BWI76_RS21340 SoxR reducing system protein RseC 0.96 BWI76_RS24030 arginine decarboxylase low > 92
Enterobacter asburiae PDN3 0.76 EX28DRAFT_0075 positive regulator of sigma(E), RseC/MucC 0.95 EX28DRAFT_2978 arginine decarboxylase (EC 4.1.1.19) low > 76
Enterobacter sp. TBS_079 0.76 MPMX20_03441 Protein RseC 0.95 MPMX20_03799 Biosynthetic arginine decarboxylase low > 85
Pantoea sp. MT58 0.62 IAI47_04865 SoxR-reducing system protein RseC 0.88 IAI47_03660 biosynthetic arginine decarboxylase low > 76
Rahnella sp. WP5 0.57 EX31_RS21815 SoxR-reducing system protein RseC 0.86 EX31_RS21355 biosynthetic arginine decarboxylase low > 89
Serratia liquefaciens MT49 0.52 IAI46_19570 SoxR-reducing system protein RseC 0.88 IAI46_21140 biosynthetic arginine decarboxylase 0.48 31
Erwinia tracheiphila SCR3 0.52 LU632_RS15410 rseC SoxR-reducing system protein RseC 0.88 LU632_RS05510 speA biosynthetic arginine decarboxylase — —
Pectobacterium carotovorum WPP14 0.45 HER17_RS05795 SoxR-reducing system protein RseC 0.86 HER17_RS02665 biosynthetic arginine decarboxylase low > 75
Dickeya dadantii 3937 0.40 DDA3937_RS15750 SoxR-reducing system protein RseC 0.88 DDA3937_RS18535 biosynthetic arginine decarboxylase low > 74
Dickeya dianthicola 67-19 0.39 HGI48_RS15835 SoxR-reducing system protein RseC 0.87 HGI48_RS18460 biosynthetic arginine decarboxylase — —
Dickeya dianthicola ME23 0.38 DZA65_RS16915 SoxR-reducing system protein RseC 0.87 DZA65_RS19595 biosynthetic arginine decarboxylase — —
Shewanella oneidensis MR-1 0.22 SO1345 rseC sigma-E factor regulatory protein RseC (NCBI ptt file) 0.54 SO1870 speA biosynthetic arginine decarboxylase (NCBI ptt file) — —
Shewanella loihica PV-4 0.21 Shew_1051 positive regulator of sigma E, RseC/MucC (RefSeq) 0.53 Shew_1619 arginine decarboxylase (RefSeq) — —
Marinobacter adhaerens HP15 0.20 HP15_778 positive regulator of sigma E, RseC/MucC 0.51 HP15_272 biosynthetic arginine decarboxylase — —
Pseudomonas stutzeri RCH2 0.20 Psest_3097 Positive regulator of sigma E activity 0.40 Psest_3366 Biosynthetic arginine decarboxylase (EC 4.1.1.19) (from data) — —
Kangiella aquimarina DSM 16071 0.20 B158DRAFT_2182 positive regulator of sigma(E), RseC/MucC 0.50 B158DRAFT_1811 arginine decarboxylase (EC 4.1.1.19) low > 40
Alteromonas macleodii MIT1002 0.18 MIT1002_02716 Sigma-E factor regulatory protein RseC 0.33 MIT1002_03905 Biosynthetic arginine decarboxylase low > 70

Not shown: 1 genomes with orthologs for HEPCGN_20540 only; 31 genomes with orthologs for HEPCGN_18610 only