Conservation of cofitness between HEPCGN_04535 and HEPCGN_16585 in Escherichia coli ECOR38

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_04535 motB flagellar motor protein MotB 1.0 HEPCGN_16585 csrD RNase E specificity factor CsrD 0.58 1
Escherichia fergusonii Becca 0.99 EFB2_02054 Motility protein B 0.99 EFB2_00579 RNase E specificity factor CsrD low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS10785 flagellar motor protein MotB 0.98 ECOLIN_RS18635 RNase E specificity factor CsrD — —
Escherichia coli ECRC102 0.98 NIAGMN_01945 motB flagellar motor protein MotB 0.99 NIAGMN_15480 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC100 0.98 OKFHMN_26115 motB flagellar motor protein MotB 0.99 OKFHMN_17720 csrD RNase E specificity factor CsrD low > 79
Escherichia coli ECRC101 0.98 MCAODC_19290 motB flagellar motor protein MotB 0.99 MCAODC_08240 csrD RNase E specificity factor CsrD 0.26 50
Escherichia coli ECRC62 0.98 BNILDI_15345 motB flagellar motor protein MotB 0.99 BNILDI_02015 csrD RNase E specificity factor CsrD low > 75
Escherichia coli BL21 0.98 ECD_01860 protein that enables flagellar motor rotation 0.99 ECD_03111 targeting factor for csrBC sRNA degradation low > 61
Escherichia coli BW25113 0.98 b1889 motB flagellar motor protein MotB (NCBI) 0.99 b3252 yhdA conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECRC98 0.98 JDDGAC_00690 motB flagellar motor protein MotB 0.99 JDDGAC_21345 csrD RNase E specificity factor CsrD 0.43 26
Escherichia coli ECOR27 0.98 NOLOHH_16555 motB flagellar motor protein MotB 0.99 NOLOHH_09505 csrD RNase E specificity factor CsrD low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.98 OHPLBJKB_01839 Motility protein B 0.99 OHPLBJKB_00453 RNase E specificity factor CsrD low > 74
Escherichia coli ECRC99 0.98 KEDOAH_01990 motB flagellar motor protein MotB 0.99 KEDOAH_10430 csrD RNase E specificity factor CsrD — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.89 GFF1670 Flagellar motor rotation protein MotB 0.84 GFF2133 RNase E specificity factor CsrD 0.60 57
Enterobacter asburiae PDN3 0.84 EX28DRAFT_0661 Flagellar motor protein 0.79 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain low > 76
Enterobacter sp. TBS_079 0.83 MPMX20_02799 Motility protein B 0.79 MPMX20_04158 RNase E specificity factor CsrD low > 85
Erwinia amylovora T8 0.67 OLJFJH_12730 flagellar motor protein MotB 0.54 OLJFJH_06905 RNase E specificity factor CsrD low > 58
Pantoea agglomerans CFBP13505 P0401 0.67 PagCFBP13505_RS02175 flagellar motor protein MotB 0.51 PagCFBP13505_RS11025 RNase E specificity factor CsrD low > 74
Pantoea sp. MT58 0.67 IAI47_08295 flagellar motor protein MotB 0.51 IAI47_02430 RNase E specificity factor CsrD low > 76
Serratia liquefaciens MT49 0.65 IAI46_16045 flagellar motor protein MotB 0.56 IAI46_22725 RNase E specificity factor CsrD low > 86
Erwinia tracheiphila SCR3 0.64 LU632_RS13565 motB flagellar motor protein MotB 0.51 LU632_RS21455 csrD RNase E specificity factor CsrD low > 74
Erwinia tracheiphila HP pepo 2.2 0.64 IJEDHG_24405 motB flagellar motor protein MotB 0.51 IJEDHG_13555 csrD RNase E specificity factor CsrD low > 61
Dickeya dadantii 3937 0.61 DDA3937_RS13550 flagellar motor protein MotB 0.51 DDA3937_RS01425 RNase E specificity factor CsrD low > 74
Dickeya dianthicola 67-19 0.61 HGI48_RS13595 flagellar motor protein MotB 0.52 HGI48_RS01345 RNase E specificity factor CsrD 0.64 27
Dickeya dianthicola ME23 0.61 DZA65_RS14080 flagellar motor protein MotB 0.52 DZA65_RS01405 RNase E specificity factor CsrD low > 75
Rahnella sp. WP5 0.60 EX31_RS11410 flagellar motor protein MotB 0.49 EX31_RS12230 RNase E specificity factor CsrD low > 89
Pectobacterium carotovorum WPP14 0.59 HER17_RS08095 flagellar motor protein MotB 0.52 HER17_RS20175 RNase E specificity factor CsrD low > 75
Pseudomonas fluorescens FW300-N2E3 0.31 AO353_13095 flagellar motor protein MotB 0.09 AO353_11170 hypothetical protein low > 101
Pseudomonas putida KT2440 0.31 PP_4904 Flagellar motor rotation protein 0.07 PP_0165 GGDEF domain protein low > 96
Pseudomonas sp. BP01 0.30 JOY50_RS17180 motB flagellar motor protein MotB 0.08 JOY50_RS28180 lapD cyclic di-GMP receptor LapD — —
Pseudomonas sp. DMC3 0.30 GFF3202 Motility protein B 0.09 GFF4286 hypothetical protein low > 89
Pseudomonas fluorescens FW300-N2C3 0.30 AO356_08705 flagellar motor protein MotB 0.09 AO356_10580 hypothetical protein 0.38 35
Pseudomonas lactucae CFBP13502 0.29 GEMAOFIL_00725 Motility protein B 0.09 GEMAOFIL_00514 RNase E specificity factor CsrD low > 93
Shewanella loihica PV-4 0.11 Shew_2767 motB flagellar motor protein MotB (RefSeq) 0.19 Shew_0384 regulatory protein CsrD (RefSeq) low > 60

Not shown: 42 genomes with orthologs for HEPCGN_04535 only; 8 genomes with orthologs for HEPCGN_16585 only