Conservation of cofitness between HEPCGN_04840 and HEPCGN_14910 in Escherichia coli ECOR38

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.0 HEPCGN_14910 ghrB glyoxylate/hydroxypyruvate reductase GhrB 0.53 16
Escherichia coli ECOR27 0.99 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 NOLOHH_07965 ghrB glyoxylate/hydroxypyruvate reductase GhrB — —
Escherichia coli ECRC62 0.99 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 BNILDI_03580 ghrB glyoxylate/hydroxypyruvate reductase GhrB low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F 0.99 OHPLBJKB_00153 Glyoxylate/hydroxypyruvate reductase B low > 73
Escherichia coli BL21 0.98 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent 1.00 ECD_03403 glyoxylate/hydroxypyruvate reductase B — —
Escherichia coli BW25113 0.98 b1835 yebU putative nucleolar proteins (VIMSS) 0.99 b3553 yiaE putative dehydrogenase (VIMSS) low > 76
Escherichia fergusonii Becca 0.98 EFB2_02166 Ribosomal RNA small subunit methyltransferase F 1.00 EFB2_00254 Glyoxylate/hydroxypyruvate reductase B low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.99 ECOLIN_RS20330 glyoxylate/hydroxypyruvate reductase GhrB — —
Escherichia coli ECRC101 0.98 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 MCAODC_06535 ghrB glyoxylate/hydroxypyruvate reductase GhrB low > 87
Escherichia coli ECRC99 0.98 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 KEDOAH_12130 ghrB glyoxylate/hydroxypyruvate reductase GhrB — —
Escherichia coli ECRC102 0.98 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 NIAGMN_13780 ghrB glyoxylate/hydroxypyruvate reductase GhrB — —
Escherichia coli ECRC100 0.98 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 OKFHMN_16020 ghrB glyoxylate/hydroxypyruvate reductase GhrB — —
Escherichia coli ECRC98 0.98 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 JDDGAC_19650 ghrB glyoxylate/hydroxypyruvate reductase GhrB low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) 0.84 GFF458 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-) low > 78
Enterobacter asburiae PDN3 0.81 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase 0.81 EX28DRAFT_3817 Lactate dehydrogenase and related dehydrogenases low > 76
Enterobacter sp. TBS_079 0.79 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F 0.84 MPMX20_00177 Glyoxylate/hydroxypyruvate reductase B low > 85
Klebsiella michiganensis M5al 0.77 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.87 BWI76_RS26960 bifunctional glyoxylate/hydroxypyruvate reductase B low > 92
Pantoea sp. MT58 0.70 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.69 IAI47_00110 glyoxylate/hydroxypyruvate reductase GhrB low > 76
Serratia liquefaciens MT49 0.69 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.74 IAI46_00085 glyoxylate/hydroxypyruvate reductase GhrB low > 86
Rahnella sp. WP5 0.67 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.69 EX31_RS05925 glyoxylate/hydroxypyruvate reductase GhrB low > 89
Pectobacterium carotovorum WPP14 0.67 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.69 HER17_RS21175 glyoxylate/hydroxypyruvate reductase GhrB low > 75
Dickeya dadantii 3937 0.66 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 DDA3937_RS21080 glyoxylate/hydroxypyruvate reductase GhrB low > 74
Dickeya dianthicola ME23 0.65 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.67 DZA65_RS00195 glyoxylate/hydroxypyruvate reductase GhrB low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.68 HGI48_RS00175 glyoxylate/hydroxypyruvate reductase GhrB low > 71
Shewanella sp. ANA-3 0.51 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.20 Shewana3_3201 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) low > 73
Shewanella loihica PV-4 0.51 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.20 Shew_0887 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) low > 60
Shewanella oneidensis MR-1 0.50 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) 0.21 SO3631 hprA glycerate dehydrogenase (NCBI ptt file) low > 76
Bacteroides thetaiotaomicron VPI-5482 0.19 BT2042 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) 0.23 BT1207 glycerate dehydrogenase (NADH-dependent) (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.18 HMPREF1181_RS08100 rRNA cytosine-C5-methyltransferase 0.22 HMPREF1181_RS16980 D-2-hydroxyacid dehydrogenase low > 56
Bacteroides ovatus ATCC 8483 0.18 BACOVA_00671 NOL1/NOP2/sun family protein 0.22 BACOVA_03970 4-phosphoerythronate dehydrogenase low > 94

Not shown: 7 genomes with orthologs for HEPCGN_04840 only; 51 genomes with orthologs for HEPCGN_14910 only