Conservation of cofitness between HEPCGN_20540 and HEPCGN_04630 in Escherichia coli ECOR38

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_20540 rseC SoxR-reducing system protein RseC 1.0 HEPCGN_04630 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB 0.91 6
Escherichia fergusonii Becca 1.00 EFB2_01326 Protein RseC 1.00 EFB2_02071 tRNA U34 carboxymethyltransferase low > 86
Escherichia coli BW25113 0.99 b2570 rseC RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) 1.00 b1871 yecP predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) low > 76
Escherichia coli ECOR27 0.99 NOLOHH_13070 rseC SoxR-reducing system protein RseC 0.99 NOLOHH_16665 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_01137 Protein RseC 1.00 OHPLBJKB_01857 tRNA U34 carboxymethyltransferase low > 73
Escherichia coli ECRC102 0.99 NIAGMN_19165 rseC SoxR-reducing system protein RseC 1.00 NIAGMN_01840 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB — —
Escherichia coli ECRC62 0.99 BNILDI_11870 rseC SoxR-reducing system protein RseC 0.99 BNILDI_15455 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB low > 75
Escherichia coli ECRC101 0.99 MCAODC_11925 rseC SoxR-reducing system protein RseC 1.00 MCAODC_19185 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB low > 87
Escherichia coli ECRC99 0.99 KEDOAH_06830 rseC SoxR-reducing system protein RseC 1.00 KEDOAH_01885 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB — —
Escherichia coli BL21 0.99 ECD_02464 SoxR iron-sulfur cluster reduction factor component 1.00 ECD_01842 tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent low > 61
Escherichia coli ECRC98 0.99 JDDGAC_25060 rseC SoxR-reducing system protein RseC 1.00 JDDGAC_00795 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB low > 86
Escherichia coli ECRC100 0.99 OKFHMN_21395 rseC SoxR-reducing system protein RseC 1.00 OKFHMN_26220 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB low > 80
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14545 SoxR-reducing system protein RseC 1.00 ECOLIN_RS10700 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF2110 Sigma factor RpoE regulatory protein RseC 0.94 GFF1652 tRNA (5-methoxyuridine) 34 synthase low > 78
Klebsiella michiganensis M5al 0.78 BWI76_RS21340 SoxR reducing system protein RseC 0.87 BWI76_RS18195 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB low > 92
Enterobacter asburiae PDN3 0.76 EX28DRAFT_0075 positive regulator of sigma(E), RseC/MucC 0.90 EX28DRAFT_0686 tRNA (mo5U34)-methyltransferase low > 76
Enterobacter sp. TBS_079 0.76 MPMX20_03441 Protein RseC 0.91 MPMX20_02776 tRNA U34 carboxymethyltransferase low > 85
Pantoea sp. MT58 0.62 IAI47_04865 SoxR-reducing system protein RseC 0.74 IAI47_08405 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB low > 76
Rahnella sp. WP5 0.57 EX31_RS21815 SoxR-reducing system protein RseC 0.80 EX31_RS17290 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB low > 89
Serratia liquefaciens MT49 0.52 IAI46_19570 SoxR-reducing system protein RseC 0.81 IAI46_14675 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB low > 86
Erwinia tracheiphila SCR3 0.52 LU632_RS15410 rseC SoxR-reducing system protein RseC 0.79 LU632_RS13460 cmoB tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB — —
Pectobacterium carotovorum WPP14 0.45 HER17_RS05795 SoxR-reducing system protein RseC 0.75 HER17_RS11890 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB low > 75
Dickeya dadantii 3937 0.40 DDA3937_RS15750 SoxR-reducing system protein RseC 0.78 DDA3937_RS10035 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB low > 74
Dickeya dianthicola 67-19 0.39 HGI48_RS15835 SoxR-reducing system protein RseC 0.79 HGI48_RS10065 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB — —
Dickeya dianthicola ME23 0.38 DZA65_RS16915 SoxR-reducing system protein RseC 0.79 DZA65_RS10475 tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB — —
Shewanella oneidensis MR-1 0.22 SO1345 rseC sigma-E factor regulatory protein RseC (NCBI ptt file) 0.64 SO2436 methyltransferase, putative (NCBI ptt file) — —
Shewanella loihica PV-4 0.21 Shew_1051 positive regulator of sigma E, RseC/MucC (RefSeq) 0.64 Shew_2082 putative methyltransferase (RefSeq) — —
Pseudomonas stutzeri RCH2 0.20 Psest_3097 Positive regulator of sigma E activity 0.51 Psest_3085 methyltransferase, putative — —
Marinobacter adhaerens HP15 0.20 HP15_778 positive regulator of sigma E, RseC/MucC 0.52 HP15_2493 methyltransferase — —
Kangiella aquimarina DSM 16071 0.20 B158DRAFT_2182 positive regulator of sigma(E), RseC/MucC 0.50 B158DRAFT_1515 methyltransferase, putative low > 40
Alteromonas macleodii MIT1002 0.18 MIT1002_02716 Sigma-E factor regulatory protein RseC 0.59 MIT1002_02226 tRNA (mo5U34)-methyltransferase low > 70

Not shown: 1 genomes with orthologs for HEPCGN_20540 only; 16 genomes with orthologs for HEPCGN_04630 only