Conservation of cofitness between GFF2719 and GFF89 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2719 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) 1.0 GFF89 Poly(A) polymerase (EC 2.7.7.19) 0.46 13
Escherichia coli BL21 0.98 ECD_01245 23S rRNA pseudouridine(2605) synthase 0.88 ECD_00142 poly(A) polymerase low > 61
Escherichia coli ECOR38 0.98 HEPCGN_25560 rluB 23S rRNA pseudouridine(2605) synthase RluB 0.88 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.98 OHPLBJKB_02415 Ribosomal large subunit pseudouridine synthase B 0.87 OHPLBJKB_03519 Poly(A) polymerase I low > 73
Escherichia coli BW25113 0.98 b1269 rluB 23S rRNA pseudouridylate synthase (NCBI) 0.88 b0143 pcnB poly(A) polymerase I (VIMSS) low > 76
Escherichia coli Nissle 1917 0.98 ECOLIN_RS07635 23S rRNA pseudouridine(2605) synthase RluB 0.88 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB low > 55
Escherichia fergusonii Becca 0.98 EFB2_02658 Ribosomal large subunit pseudouridine synthase B 0.88 EFB2_03901 Poly(A) polymerase I low > 86
Escherichia coli ECRC100 0.97 OKFHMN_02630 rluB 23S rRNA pseudouridine(2605) synthase RluB 0.88 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB low > 80
Escherichia coli ECRC98 0.97 JDDGAC_05175 rluB 23S rRNA pseudouridine(2605) synthase RluB 0.88 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB low > 86
Escherichia coli ECRC62 0.97 BNILDI_18445 rluB 23S rRNA pseudouridine(2605) synthase RluB 0.88 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.94 1
Escherichia coli ECRC101 0.97 MCAODC_15635 rluB 23S rRNA pseudouridine(2605) synthase RluB 0.88 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB low > 87
Escherichia coli ECRC99 0.97 KEDOAH_26135 rluB 23S rRNA pseudouridine(2605) synthase RluB 0.88 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli ECOR27 0.97 NOLOHH_20295 rluB 23S rRNA pseudouridine(2605) synthase RluB 0.88 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB low > 75
Escherichia coli ECRC102 0.97 NIAGMN_26800 rluB 23S rRNA pseudouridine(2605) synthase RluB 0.88 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB — —
Enterobacter sp. TBS_079 0.95 MPMX20_02507 Ribosomal large subunit pseudouridine synthase B 0.84 MPMX20_00829 Poly(A) polymerase I 0.26 33
Enterobacter asburiae PDN3 0.92 EX28DRAFT_0940 pseudouridine synthase 0.85 EX28DRAFT_3732 poly(A) polymerase low > 76
Klebsiella michiganensis M5al 0.91 BWI76_RS11880 23S rRNA pseudouridylate synthase B 0.84 BWI76_RS05005 polynucleotide adenylyltransferase low > 92
Serratia liquefaciens MT49 0.85 IAI46_13995 23S rRNA pseudouridine(2605) synthase RluB 0.76 IAI46_21220 polynucleotide adenylyltransferase PcnB low > 86
Pantoea sp. MT58 0.85 IAI47_09210 23S rRNA pseudouridine(2605) synthase RluB 0.78 IAI47_15645 polynucleotide adenylyltransferase PcnB low > 76
Erwinia tracheiphila SCR3 0.85 LU632_RS12730 rluB 23S rRNA pseudouridine(2605) synthase RluB 0.80 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB low > 74
Pectobacterium carotovorum WPP14 0.83 HER17_RS10900 23S rRNA pseudouridine(2605) synthase RluB 0.76 HER17_RS05570 polynucleotide adenylyltransferase PcnB low > 75
Dickeya dadantii 3937 0.82 DDA3937_RS10500 23S rRNA pseudouridine(2605) synthase RluB 0.77 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB low > 74
Dickeya dianthicola 67-19 0.82 HGI48_RS10500 23S rRNA pseudouridine(2605) synthase RluB 0.77 HGI48_RS16060 polynucleotide adenylyltransferase PcnB low > 71
Dickeya dianthicola ME23 0.81 DZA65_RS10980 23S rRNA pseudouridine(2605) synthase RluB 0.77 DZA65_RS17145 polynucleotide adenylyltransferase PcnB low > 75
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_05970 23S rRNA pseudouridylate synthase B 0.58 CSW01_03145 polynucleotide adenylyltransferase PcnB — —
Shewanella sp. ANA-3 0.65 Shewana3_1525 ribosomal large subunit pseudouridine synthase B (RefSeq) 0.53 Shewana3_3406 poly(A) polymerase (RefSeq) 0.56 27
Shewanella loihica PV-4 0.64 Shew_2246 pseudouridine synthase (RefSeq) 0.52 Shew_3131 poly(A) polymerase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.64 Sama_2124 pseudouridine synthase, Rsu (RefSeq) 0.52 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.57 MIT1002_01435 Ribosomal large subunit pseudouridine synthase B 0.53 MIT1002_03692 Poly(A) polymerase I precursor low > 70
Acinetobacter radioresistens SK82 0.50 MPMX26_02450 Ribosomal large subunit pseudouridine synthase B 0.30 MPMX26_00543 Poly(A) polymerase I low > 36
Marinobacter adhaerens HP15 0.49 HP15_1530 RNA-binding S4 domain protein 0.46 HP15_326 polyA polymerase low > 73
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_2311 ribosomal large subunit pseudouridine synthase B (EC 5.4.99.-) 0.49 B158DRAFT_0058 poly(A) polymerase low > 40

Not shown: 2 genomes with orthologs for GFF2719 only; 27 genomes with orthologs for GFF89 only