Conservation of cofitness between ECD_03421 and ECD_04045 in Escherichia coli BL21

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03421 xylose divergent operon transcriptional activator 1.0 ECD_04045 nitric oxide-sensitive repressor for NO regulon low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00135 Xylose operon regulatory protein 1.00 OHPLBJKB_03864 HTH-type transcriptional repressor NsrR low > 73
Escherichia coli ECRC99 1.00 KEDOAH_12215 xylR DNA-binding transcriptional regulator XylR 0.99 KEDOAH_15930 nsrR nitric oxide-sensing transcriptional repressor NsrR — —
Escherichia coli ECRC102 1.00 NIAGMN_13695 xylR DNA-binding transcriptional regulator XylR 0.99 NIAGMN_10075 nsrR nitric oxide-sensing transcriptional repressor NsrR — —
Escherichia coli ECRC101 1.00 MCAODC_06450 xylR DNA-binding transcriptional regulator XylR 0.97 MCAODC_02740 nsrR nitric oxide-sensing transcriptional repressor NsrR low > 87
Escherichia coli ECOR27 1.00 NOLOHH_07880 xylR DNA-binding transcriptional regulator XylR 0.99 NOLOHH_04490 nsrR nitric oxide-sensing transcriptional repressor NsrR low > 75
Escherichia coli Nissle 1917 1.00 ECOLIN_RS20410 D-xylose utilization transcriptional activator XylR 0.99 ECOLIN_RS24260 nitric oxide-sensing transcriptional repressor NsrR low > 55
Escherichia coli ECRC100 1.00 OKFHMN_15935 xylR DNA-binding transcriptional regulator XylR 0.99 OKFHMN_12225 nsrR nitric oxide-sensing transcriptional repressor NsrR low > 80
Escherichia coli BW25113 1.00 b3569 xylR DNA-binding transcriptional activator, xylose-binding (NCBI) 0.99 b4178 yjeB predicted DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli ECRC62 1.00 BNILDI_03665 xylR DNA-binding transcriptional regulator XylR 0.99 BNILDI_07000 nsrR nitric oxide-sensing transcriptional repressor NsrR low > 75
Escherichia coli ECRC98 1.00 JDDGAC_19565 xylR DNA-binding transcriptional regulator XylR 0.99 JDDGAC_15865 nsrR nitric oxide-sensing transcriptional repressor NsrR low > 86
Escherichia coli ECOR38 1.00 HEPCGN_14820 xylR DNA-binding transcriptional regulator XylR 0.99 HEPCGN_10455 nsrR nitric oxide-sensing transcriptional repressor NsrR low > 87
Escherichia fergusonii Becca 1.00 EFB2_00238 Xylose operon regulatory protein 0.99 EFB2_04357 HTH-type transcriptional repressor NsrR low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF442 Xylose activator XylR (AraC family) 0.93 GFF831 Nitrite-sensitive transcriptional repressor NsrR low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_3834 Transcriptional regulators 0.95 EX28DRAFT_3375 transcriptional regulator, BadM/Rrf2 family low > 76
Enterobacter sp. TBS_079 0.91 MPMX20_00161 Xylose operon regulatory protein 0.93 MPMX20_00459 HTH-type transcriptional repressor NsrR low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS27045 XylR family transcriptional regulator 0.93 BWI76_RS02570 transcriptional regulator low > 92
Pantoea sp. MT58 0.84 IAI47_00175 XylR family transcriptional regulator 0.76 IAI47_02620 nitric oxide-sensing transcriptional repressor NsrR low > 76
Rahnella sp. WP5 0.84 EX31_RS09745 XylR family transcriptional regulator 0.83 EX31_RS08790 nitric oxide-sensing transcriptional repressor NsrR low > 89
Serratia liquefaciens MT49 0.82 IAI46_00300 DNA-binding transcriptional regulator 0.85 IAI46_01655 nitric oxide-sensing transcriptional repressor NsrR low > 86
Pectobacterium carotovorum WPP14 0.82 HER17_RS21065 XylR family transcriptional regulator 0.88 HER17_RS03830 nitric oxide-sensing transcriptional repressor NsrR low > 75
Dickeya dianthicola ME23 0.81 DZA65_RS00330 DNA-binding transcriptional regulator 0.89 DZA65_RS18410 nitric oxide-sensing transcriptional repressor NsrR low > 75
Dickeya dianthicola 67-19 0.81 HGI48_RS00330 XylR family transcriptional regulator 0.90 HGI48_RS17320 nitric oxide-sensing transcriptional repressor NsrR low > 71
Dickeya dadantii 3937 0.81 DDA3937_RS20915 DNA-binding transcriptional regulator 0.89 DDA3937_RS17265 nitric oxide-sensing transcriptional repressor NsrR low > 74
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS25880 DNA-binding transcriptional regulator 0.42 QEN71_RS22375 Rrf2 family transcriptional regulator low > 153
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_03875 transcriptional regulator, AraC family 0.41 H281DRAFT_00816 transcriptional regulator, BadM/Rrf2 family low > 103
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS32830 AraC family transcriptional regulator 0.43 BPHYT_RS08985 Rrf2 family transcriptional regulator low > 109
Paraburkholderia graminis OAS925 0.46 ABIE53_004928 LacI family transcriptional regulator 0.42 ABIE53_002032 Rrf2 family nitric oxide-sensitive transcriptional repressor low > 113
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS18215 DNA-binding transcriptional regulator 0.41 ABZR87_RS04615 Rrf2 family transcriptional regulator low > 80
Echinicola vietnamensis KMM 6221, DSM 17526 0.19 Echvi_3418 Transcriptional regulators 0.17 Echvi_4495 Rrf2 family protein low > 79

Not shown: 12 genomes with orthologs for ECD_03421 only; 29 genomes with orthologs for ECD_04045 only