Conservation of cofitness between ECD_03064 and ECD_03489 in Escherichia coli BL21

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03064 periplasmic membrane-anchored LPS-binding protein; LPS export protein 1.0 ECD_03489 lipopolysaccharide core biosynthesis protein 0.63 4
Escherichia coli ECRC101 0.99 OKFHMN_17955 lptC LPS export ABC transporter periplasmic protein LptC 1.00 OKFHMN_15650 rfaQ lipopolysaccharide core heptosyltransferase RfaQ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_00501 Lipopolysaccharide export system protein LptC 1.00 OHPLBJKB_00070 Lipopolysaccharide core heptosyltransferase RfaQ low > 73
Escherichia fergusonii Becca 0.99 EFB2_00624 Lipopolysaccharide export system protein LptC 0.99 EFB2_00181 Lipopolysaccharide core heptosyltransferase RfaQ low > 86
Escherichia coli BW25113 0.99 b3199 yrbK hypothetical protein (NCBI) 0.71 b3632 rfaQ lipopolysaccharide core biosynthesis protein (NCBI) 0.50 9
Escherichia coli Nissle 1917 0.99 ECOLIN_RS18410 LPS export ABC transporter periplasmic protein LptC 0.99 ECOLIN_RS20700 lipopolysaccharide core heptosyltransferase RfaQ 0.71 25
Escherichia coli ECRC102 0.99 NIAGMN_15715 lptC LPS export ABC transporter periplasmic protein LptC 1.00 NIAGMN_13410 rfaQ lipopolysaccharide core heptosyltransferase RfaQ — —
Escherichia coli ECRC101 0.99 MCAODC_08475 lptC LPS export ABC transporter periplasmic protein LptC 1.00 MCAODC_06160 rfaQ lipopolysaccharide core heptosyltransferase RfaQ — —
Escherichia coli ECRC62 0.99 BNILDI_01780 lptC LPS export ABC transporter periplasmic protein LptC 1.00 BNILDI_03985 rfaQ lipopolysaccharide core heptosyltransferase RfaQ — —
Escherichia coli ECRC99 0.99 KEDOAH_10195 lptC LPS export ABC transporter periplasmic protein LptC 1.00 KEDOAH_12500 rfaQ lipopolysaccharide core heptosyltransferase RfaQ — —
Escherichia coli ECOR27 0.99 NOLOHH_09755 lptC LPS export ABC transporter periplasmic protein LptC 1.00 NOLOHH_07530 rfaQ lipopolysaccharide core heptosyltransferase RfaQ low > 57
Escherichia coli ECOR38 0.99 HEPCGN_16830 lptC LPS export ABC transporter periplasmic protein LptC 0.99 HEPCGN_14475 rfaQ lipopolysaccharide core heptosyltransferase RfaQ low > 85
Escherichia coli ECRC98 0.99 JDDGAC_21580 lptC LPS export ABC transporter periplasmic protein LptC 1.00 JDDGAC_19275 rfaQ lipopolysaccharide core heptosyltransferase RfaQ — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF2943 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters 0.67 GFF379 Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-) low > 78
Enterobacter asburiae PDN3 0.88 EX28DRAFT_3253 Uncharacterized protein conserved in bacteria 0.40 EX28DRAFT_3878 lipopolysaccharide heptosyltransferase III, putative 0.69 12
Enterobacter sp. TBS_079 0.87 MPMX20_04105 Lipopolysaccharide export system protein LptC 0.42 MPMX20_00107 Lipopolysaccharide core heptosyltransferase RfaQ 0.29 27
Klebsiella michiganensis M5al 0.85 BWI76_RS25250 LPS export ABC transporter periplasmic protein LptC 0.39 BWI76_RS27295 putative lipopolysaccharide heptosyltransferase III — —
Pantoea sp. MT58 0.67 IAI47_17170 LPS export ABC transporter periplasmic protein LptC 0.40 IAI47_00660 putative lipopolysaccharide heptosyltransferase III low > 76
Serratia liquefaciens MT49 0.66 IAI46_22455 LPS export ABC transporter periplasmic protein LptC 0.43 IAI46_24775 putative lipopolysaccharide heptosyltransferase III — —
Erwinia tracheiphila SCR3 0.63 LU632_RS21265 lptC LPS export ABC transporter periplasmic protein LptC 0.39 LU632_RS21950 rfaQ putative lipopolysaccharide heptosyltransferase III — —
Pectobacterium carotovorum WPP14 0.61 HER17_RS20045 LPS export ABC transporter periplasmic protein LptC 0.31 HER17_RS20785 putative lipopolysaccharide heptosyltransferase III low > 75
Rahnella sp. WP5 0.61 EX31_RS12415 LPS export ABC transporter periplasmic protein LptC 0.42 EX31_RS14430 putative lipopolysaccharide heptosyltransferase III low > 89
Dickeya dadantii 3937 0.57 DDA3937_RS01545 LPS export ABC transporter periplasmic protein LptC 0.27 DDA3937_RS20455 putative lipopolysaccharide heptosyltransferase III — —
Dickeya dianthicola ME23 0.56 DZA65_RS01525 LPS export ABC transporter periplasmic protein LptC 0.26 DZA65_RS00810 putative lipopolysaccharide heptosyltransferase III low > 75
Dickeya dianthicola 67-19 0.56 HGI48_RS01460 LPS export ABC transporter periplasmic protein LptC 0.27 HGI48_RS00755 putative lipopolysaccharide heptosyltransferase III — —
Shewanella amazonensis SB2B 0.20 Sama_3085 hypothetical protein (RefSeq) 0.12 Sama_0102 glycosyl transferase family protein (RefSeq) — —
Shewanella oneidensis MR-1 0.18 SO3958 conserved hypothetical protein (NCBI ptt file) 0.12 SO4678 heptosyl transferase, glycosyltransferase family 9 protein (NCBI ptt file) — —
Shewanella sp. ANA-3 0.18 Shewana3_0675 hypothetical protein (RefSeq) 0.13 Shewana3_4100 glycosyl transferase family protein (RefSeq) — —
Shewanella loihica PV-4 0.18 Shew_3308 hypothetical protein (RefSeq) 0.12 Shew_3702 glycosyl transferase family protein (RefSeq) — —

Not shown: 2 genomes with orthologs for ECD_03064 only; 19 genomes with orthologs for ECD_03489 only